Conservation and innovation in the DUX4-family gene network

par Whiddon, Jennifer L., Langford, Ashlee T., Wong, Chao-Jen, Zhong, Jun Wen, Tapscott, Stephen J.
Publié dans Nat Genet (2017)

Patterns of DNA methylation in the normal colon vary by anatomical location, gender, and age

par Kaz, Andrew M, Wong, Chao-Jen, Dzieciatkowski, Slavomir, Luo, Yanxin, Schoen, Robert E, Grady, William M
Publié 2014

Global DNA methylation patterns in Barrett’s esophagus, dysplastic Barrett’s, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use

par Kaz, Andrew M., Wong, Chao-Jen, Varadan, Vinay, Willis, Joseph E., Chak, Amitabh, Grady, William M.
Publié dans Clin Epigenetics (2016)

Erratum to: Global DNA methylation patterns in Barrett’s esophagus, dysplastic Barrett’s, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use

par Kaz, Andrew M., Wong, Chao-Jen, Varadan, Vinay, Willis, Joseph E., Chak, Amitabh, Grady, William M.
Publié dans Clin Epigenetics (2017)

A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett’s Esophagus

par Curtius, Kit, Wong, Chao-Jen, Hazelton, William D., Kaz, Andrew M., Chak, Amitabh, Willis, Joseph E., Grady, William M., Luebeck, E. Georg
Publié dans PLoS Comput Biol (2016)

DNA methylation profiling in Barrett's esophagus and esophageal adenocarcinoma reveals unique methylation signatures and molecular subclasses

par Kaz, Andrew M, Wong, Chao-Jen, Luo, Yanxin, Virgin, Jeffrey B, Washington, M Kay, Willis, Joseph E, Leidner, Rom S, Chak, Amitabh, Grady, William M
Publié 2011

Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue

par Geybels, Milan S., Zhao, Shanshan, Wong, Chao-Jen, Bibikova, Marina, Klotzle, Brandy, Wu, Michael, Ostrander, Elaine A., Fan, Jian-Bing, Feng, Ziding, Stanford, Janet L.
Publié dans Prostate (2015)

Small noncoding RNAs in FSHD2 muscle cells reveal both DUX4- and SMCHD1-specific signatures

par Lim, Jong-Won, Wong, Chao-Jen, Yao, Zizhen, Tawil, Rabi, van der Maarel, Silvère M, Miller, Daniel G, Tapscott, Stephen J, Filippova, Galina N
Publié dans Hum Mol Genet (2018)

DUX4-induced bidirectional HSATII satellite repeat transcripts form intranuclear double-stranded RNA foci in human cell models of FSHD

par Shadle, Sean C, Bennett, Sean R, Wong, Chao-Jen, Karreman, Nancy A, Campbell, Amy E, van der Maarel, Silvère M, Bass, Brenda L, Tapscott, Stephen J
Publié dans Hum Mol Genet (2019)

DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression

par Resnick, Rebecca, Wong, Chao-Jen, Hamm, Danielle C., Bennett, Sean R., Skene, Peter J., Hake, Sandra B., Henikoff, Steven, van der Maarel, Silvère M., Tapscott, Stephen J.
Publié dans Cell Rep (2019)

DUX4-induced dsRNA and MYC mRNA stabilization activate apoptotic pathways in human cell models of facioscapulohumeral dystrophy

par Shadle, Sean C., Zhong, Jun Wen, Campbell, Amy E., Conerly, Melissa L., Jagannathan, Sujatha, Wong, Chao-Jen, Morello, Timothy D., van der Maarel, Silvère M., Tapscott, Stephen J.
Publié dans PLoS Genet (2017)

Per-channel basis normalization methods for flow cytometry data

par Hahne, Florian, Khodabakhshi, Alireza Hadj, Bashashati, Ali, Wong, Chao-Jen, Gascoyne, Randy D., Weng, Andrew P., Seifert-Margolis, Vicky, Bourcier, Katarzyna, Asare, Adam, Lumley, Thomas, Gentleman, Robert, Brinkman, Ryan R.
Publié 2010

Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes

par Shui, Irene M, Wong, Chao-Jen, Zhao, Shanshan, Kolb, Suzanne, Ebot, Ericka M, Geybels, Milan, Rubicz, Rohina, Wright, Jonathan L., Lin, Daniel W., Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bing, Ostrander, Elaine A., Feng, Ziding, Stanford, Janet L.
Publié dans Cancer (2016)

SMCHD1 regulates a limited set of gene clusters on autosomal chromosomes

par Mason, Amanda G., Slieker, Roderick C., Balog, Judit, Lemmers, Richard J. L. F., Wong, Chao-Jen, Yao, Zizhen, Lim, Jong-Won, Filippova, Galina N., Ne, Enrico, Tawil, Rabi, Heijmans, Bas T., Tapscott, Stephen J., van der Maarel, Silvère M.
Publié dans Skelet Muscle (2017)

Longitudinal measures of RNA expression and disease activity in FSHD muscle biopsies

par Wong, Chao-Jen, Wang, Leo H, Friedman, Seth D, Shaw, Dennis, Campbell, Amy E, Budech, Chris B, Lewis, Leann M, Lemmers, Richard J F L, Statland, Jeffrey M, van der Maarel, Silvère M, Tawil, Rabi N, Tapscott, Stephen J
Publié dans Hum Mol Genet (2020)

Differences in DNA Methylation Signatures Reveal Multiple Pathways of Progression from Adenoma to Colorectal Cancer

par Luo, Yanxin, Wong, Chao-Jen, Kaz, Andrew M., Dzieciatkowski, Slavomir, Carter, Kelly T., Morris, Shelli M., Wang, Jianping, Willis, Joseph E., Makar, Karen W., Ulrich, Cornelia M., Lutterbaugh, James D., Shrubsole, Martha J., Zheng, Wei, Markowitz, Sanford D., Grady, William M.
Publié 2014

MRI-informed muscle biopsies correlate MRI with pathology and DUX4 target gene expression in FSHD

par Wang, Leo H, Friedman, Seth D, Shaw, Dennis, Snider, Lauren, Wong, Chao-Jen, Budech, Chris B, Poliachik, Sandra L, Gove, Nancy E, Lewis, Leann M, Campbell, Amy E, Lemmers, Richard J F L, Maarel, Silvère M, Tapscott, Stephen J, Tawil, Rabi N
Publié dans Hum Mol Genet (2019)

Methylated B3GAT2 and ZNF793 are potential detection biomarkers for Barrett’s esophagus

par Yu, Ming, O’Leary, Rachele M, Kaz, Andrew M., Morris, Shelli M., Carter, Kelly T., Chak, Amitabh, Chandar, Apoorva, Willis, Joseph E., Moinova, Helen R., Markowitz, Sanford D., Brenner, Dean E., Anandabapasathy, Sharmila, Westerhoff, Maria, Wong, Chao-Jen, Shaheen, Nicholas J., Chen, Yanwen, Barnholtz-Sloan, Jill S., Grady, William M.
Publié dans Cancer Epidemiol Biomarkers Prev (2015)