Beenome Soon: Honey Bees as a Model ‘Non-Model’ System for Comparative Genomics

Por Evans, Jay D., Weaver, Daniel B.
Publicado em 2003

η(z)∕κ: A transverse relaxation optimized spectroscopy NMR experiment measuring longitudinal relaxation interference

Por Weaver, Daniel S., Zuiderweg, Erik R.P.
Publicado em 2008

Pathway collages: personalized multi-pathway diagrams

Por Paley, Suzanne, O’Maille, Paul E., Weaver, Daniel, Karp, Peter D.
Publicado no BMC Bioinformatics (2016)

Caenorhabditis elegans embryonic axial patterning requires two recently discovered posterior-group Hox genes

Por Van Auken, Kimberly, Weaver, Daniel C., Edgar, Lois G., Wood, William B.
Publicado em 2000

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

Por Weaver, Daniel S, Keseler, Ingrid M, Mackie, Amanda, Paulsen, Ian T, Karp, Peter D
Publicado em 2014

An Enlarged Profile of Uremic Solutes

Por Tanaka, Hisae, Sirich, Tammy L., Plummer, Natalie S., Weaver, Daniel S., Meyer, Timothy W.
Publicado no PLoS One (2015)

A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs

Por Dingerdissen, Hayley, Weaver, Daniel S, Karp, Peter D, Pan, Yang, Simonyan, Vahan, Mazumder, Raja
Publicado em 2014

BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity

Por Cantarel, Brandi L, Weaver, Daniel, McNeill, Nathan, Zhang, Jianhua, Mackey, Aaron J, Reese, Justin
Publicado em 2014

Population-genomic variation within RNA viruses of the Western honey bee, Apis mellifera, inferred from deep sequencing

Por Cornman, Robert Scott, Boncristiani, Humberto, Dainat, Benjamin, Chen, Yanping, vanEngelsdorp, Dennis, Weaver, Daniel, Evans, Jay D
Publicado em 2013

Computational Metabolomics Operations at BioCyc.org

Por Karp, Peter D., Billington, Richard, Holland, Timothy A., Kothari, Anamika, Krummenacker, Markus, Weaver, Daniel, Latendresse, Mario, Paley, Suzanne
Publicado no Metabolites (2015)

Analysis of archived residual newborn screening blood spots after whole genome amplification

Por Cantarel, Brandi L., Lei, Yunping, Weaver, Daniel, Zhu, Huiping, Farrell, Andrew, Benstead-Hume, Graeme, Reese, Justin, Finnell, Richard H.
Publicado no BMC Genomics (2015)

A Method to Constrain Genome-Scale Models with (13)C Labeling Data

Por García Martín, Héctor, Kumar, Vinay Satish, Weaver, Daniel, Ghosh, Amit, Chubukov, Victor, Mukhopadhyay, Aindrila, Arkin, Adam, Keasling, Jay D.
Publicado no PLoS Comput Biol (2015)

Transcriptomic and functional resources for the small hive beetle Aethina tumida, a worldwide parasite of honey bees

Por Tarver, Matthew R., Huang, Qiang, de Guzman, Lilia, Rinderer, Tom, Holloway, Beth, Reese, Justin, Weaver, Daniel, Evans, Jay D.
Publicado no Genom Data (2016)

A Peptide-Based Method for (13)C Metabolic Flux Analysis in Microbial Communities

Por Ghosh, Amit, Nilmeier, Jerome, Weaver, Daniel, Adams, Paul D., Keasling, Jay D., Mukhopadhyay, Aindrila, Petzold, Christopher J., Martín, Héctor García
Publicado em 2014

HipA-Triggered Growth Arrest and β-Lactam Tolerance in Escherichia coli Are Mediated by RelA-Dependent ppGpp Synthesis

Por Bokinsky, Gregory, Baidoo, Edward E. K., Akella, Swetha, Burd, Helcio, Weaver, Daniel, Alonso-Gutierrez, Jorge, García-Martín, Héctor, Lee, Taek Soon, Keasling, Jay D.
Publicado em 2013

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

Por Birkel, Garrett W., Ghosh, Amit, Kumar, Vinay S., Weaver, Daniel, Ando, David, Backman, Tyler W. H., Arkin, Adam P., Keasling, Jay D., Martín, Héctor García
Publicado no BMC Bioinformatics (2017)

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism

Por Birkel, Garrett W., Ghosh, Amit, Kumar, Vinay S., Weaver, Daniel, Ando, David, Backman, Tyler W. H., Arkin, Adam P., Keasling, Jay D., Martín, Héctor García
Publicado no BMC Bioinformatics (2017)

Computational and transcriptional evidence for microRNAs in the honey bee genome

Por Weaver, Daniel B, Anzola, Juan M, Evans, Jay D, Reid, Jeffrey G, Reese, Justin T, Childs, Kevin L, Zdobnov, Evgeny M, Samanta, Manoj P, Miller, Jonathan, Elsik, Christine G
Publicado em 2007

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

Por Karp, Peter D., Latendresse, Mario, Paley, Suzanne M., Krummenacker, Markus, Ong, Quang D., Billington, Richard, Kothari, Anamika, Weaver, Daniel, Lee, Thomas, Subhraveti, Pallavi, Spaulding, Aaron, Fulcher, Carol, Keseler, Ingrid M., Caspi, Ron
Publicado no Brief Bioinform (2016)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Por Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A., Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Karp, Peter D.
Publicado no Nucleic Acids Res (2016)