Efficiently gap-filling reaction networks

Por Latendresse, Mario
Publicado em 2014

Web-based metabolic network visualization with a zooming user interface

Por Karp Peter D, Latendresse Mario
Publicado em 2011-05-01

An advanced web query interface for biological databases

Por Latendresse, Mario, Karp, Peter D.
Publicado em 2010

Web-based metabolic network visualization with a zooming user interface

Por Latendresse, Mario, Karp, Peter D
Publicado em 2011

Evaluation of reaction gap-filling accuracy by randomization

Por Latendresse, Mario, Karp, Peter D.
Publicado no BMC Bioinformatics (2018)

The Pathway Tools Pathway Prediction Algorithm

Por Karp, Peter D., Latendresse, Mario, Caspi, Ron
Publicado em 2011

Browsing Metabolic and Regulatory Networks with BioCyc

Por Latendresse, Mario, Paley, Suzanne, Karp, Peter D.
Publicado em 2012

Regulatory network operations in the Pathway Tools software

Por Paley, Suzanne M, Latendresse, Mario, Karp, Peter D
Publicado em 2012

Construction and completion of flux balance models from pathway databases

Por Latendresse, Mario, Krummenacker, Markus, Trupp, Miles, Karp, Peter D.
Publicado em 2012

Computational Metabolomics Operations at BioCyc.org

Por Karp, Peter D., Billington, Richard, Holland, Timothy A., Kothari, Anamika, Krummenacker, Markus, Weaver, Daniel, Latendresse, Mario, Paley, Suzanne
Publicado no Metabolites (2015)

Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants(1)([W])([OA])

Por Zhang, Peifen, Dreher, Kate, Karthikeyan, A., Chi, Anjo, Pujar, Anuradha, Caspi, Ron, Karp, Peter, Kirkup, Vanessa, Latendresse, Mario, Lee, Cynthia, Mueller, Lukas A., Muller, Robert, Rhee, Seung Yon
Publicado em 2010

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

Por Caspi, Ron, Foerster, Hartmut, Fulcher, Carol A., Kaipa, Pallavi, Krummenacker, Markus, Latendresse, Mario, Paley, Suzanne, Rhee, Seung Y., Shearer, Alexander G., Tissier, Christophe, Walk, Thomas C., Zhang, Peifen, Karp, Peter D.
Publicado em 2008

The MetaCyc database of metabolic pathways and enzymes

Por Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Publicado no Nucleic Acids Res (2018)

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

Por Karp, Peter D., Latendresse, Mario, Paley, Suzanne M., Krummenacker, Markus, Ong, Quang D., Billington, Richard, Kothari, Anamika, Weaver, Daniel, Lee, Thomas, Subhraveti, Pallavi, Spaulding, Aaron, Fulcher, Carol, Keseler, Ingrid M., Caspi, Ron
Publicado no Brief Bioinform (2016)

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

Por Karp, Peter D., Paley, Suzanne M., Krummenacker, Markus, Latendresse, Mario, Dale, Joseph M., Lee, Thomas J., Kaipa, Pallavi, Gilham, Fred, Spaulding, Aaron, Popescu, Liviu, Altman, Tomer, Paulsen, Ian, Keseler, Ingrid M., Caspi, Ron
Publicado em 2010

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Por Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A., Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Karp, Peter D.
Publicado no Nucleic Acids Res (2016)

Multidimensional annotation of the Escherichia coli K-12 genome

Por Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., Paulsen, Ian, Collado-Vides, Julio, Gama-Castro, Socorro, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I., Bonavides-Martinez, César, Ingraham, John
Publicado em 2007

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Por Caspi, Ron, Altman, Tomer, Dale, Joseph M., Dreher, Kate, Fulcher, Carol A., Gilham, Fred, Kaipa, Pallavi, Karthikeyan, Athikkattuvalasu S., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Paley, Suzanne, Popescu, Liviu, Pujar, Anuradha, Shearer, Alexander G., Zhang, Peifen, Karp, Peter D.
Publicado em 2010

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Por Caspi, Ron, Altman, Tomer, Dreher, Kate, Fulcher, Carol A., Subhraveti, Pallavi, Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Pujar, Anuradha, Shearer, Alexander G., Travers, Michael, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Publicado em 2012

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

Por Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A., Holland, Timothy A., Keseler, Ingrid M., Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Publicado em 2014