RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

Por Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Pérez-Rueda, Ernesto, Bonavides-Martínez, César, Collado-Vides, Julio
Publicado em 2001

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

Por Salgado, Heladia, Gama-Castro, Socorro, Martínez-Antonio, Agustino, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Peralta-Gil, Martín, Garcia-Alonso, Delfino, Jiménez-Jacinto, Verónica, Santos-Zavaleta, Alberto, Bonavides-Martínez, César, Collado-Vides, Julio
Publicado em 2004

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Por Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, Martínez-Flores, Irma, Jiménez-Jacinto, Verónica, Bonavides-Martínez, César, Segura-Salazar, Juan, Martínez-Antonio, Agustino, Collado-Vides, Julio
Publicado em 2006

Multidimensional annotation of the Escherichia coli K-12 genome

Por Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., Paulsen, Ian, Collado-Vides, Julio, Gama-Castro, Socorro, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I., Bonavides-Martinez, César, Ingraham, John
Publicado em 2007

EcoCyc: A comprehensive view of Escherichia coli biology

Por Keseler, Ingrid M., Bonavides-Martínez, César, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, Krummenacker, Markus, Nolan, Laura M., Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Shearer, Alexander Glennon, Karp, Peter D.
Publicado em 2009

EcoCyc: a comprehensive database of Escherichia coli biology

Por Keseler, Ingrid M., Collado-Vides, Julio, Santos-Zavaleta, Alberto, Peralta-Gil, Martin, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Paley, Suzanne, Krummenacker, Markus, Altman, Tomer, Kaipa, Pallavi, Spaulding, Aaron, Pacheco, John, Latendresse, Mario, Fulcher, Carol, Sarker, Malabika, Shearer, Alexander G., Mackie, Amanda, Paulsen, Ian, Gunsalus, Robert P., Karp, Peter D.
Publicado em 2011

The EcoCyc Database

Por Karp, Peter D., Weaver, Daniel, Paley, Suzanne, Fulcher, Carol, Kubo, Aya, Kothari, Anamika, Krummenacker, Markus, Subhraveti, Pallavi, Weerasinghe, Deepika, Gama-Castro, Socorro, Huerta, Araceli M., Muñiz-Rascado, Luis, Bonavides-Martinez, César, Weiss, Verena, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Schröder, Imke, Mackie, Amanda, Gunsalus, Robert, Collado-Vides, Julio, Keseler, Ingrid M., Paulsen, Ian
Publicado no EcoSal Plus (2014)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Por Keseler, Ingrid M., Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A., Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D.
Publicado no Nucleic Acids Res (2017)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Por Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M., Treviño-Quintanilla, Luis, Collado-Vides, Julio
Publicado em 2008

EcoCyc: fusing model organism databases with systems biology

Por Keseler, Ingrid M., Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G., Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P., Paulsen, Ian, Karp, Peter D.
Publicado em 2013

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Por Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Moral-Chávez, Víctor Del, Rinaldi, Fabio, Collado-Vides, Julio
Publicado no Nucleic Acids Res (2016)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Por Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S., López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M., Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
Publicado em 2011

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Por Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Publicado em 2013