Using RegulonDB, the Escherichia coli K-12 gene regulatory transcriptional network database

מאת Salgado, Heladia, Martínez-Flores, Irma, Bustamante, Víctor H., Alquicira-Hernández, Kevin, García-Sotelo, Jair S., García-Alonso, Delfino, Collado-Vides, Julio
הוצא לאור ב Curr Protoc Bioinformatics (2018)

Prediction and identification of recurrent genomic rearrangements that generate chimeric chromosomes in Saccharomyces cerevisiae

מאת Palacios-Flores, Kim, Castillo, Alejandra, Uribe, Carina, García Sotelo, Jair, Boege, Margareta, Dávila, Guillermo, Flores, Margarita, Palacios, Rafael, Morales, Lucia
הוצא לאור ב Proc Natl Acad Sci U S A (2019)

Perfect Match Genomic Landscape strategy: Refinement and customization of reference genomes

מאת Palacios-Flores, Kim, García-Sotelo, Jair, Castillo, Alejandra, Uribe, Carina, Morales, Lucía, Boege, Margareta, Dávila, Guillermo, Flores, Margarita, Palacios, Rafael
הוצא לאור ב Proc Natl Acad Sci U S A (2021)

VCF/Plotein: visualization and prioritization of genomic variants from human exome sequencing projects

מאת Ossio, Raul, Garcia-Salinas, O Isaac, Anaya-Mancilla, Diego Said, Garcia-Sotelo, Jair S, Aguilar, Luis A, Adams, David J, Robles-Espinoza, Carla Daniela
הוצא לאור ב Bioinformatics (2019)

A Perfect Match Genomic Landscape Provides a Unified Framework for the Precise Detection of Variation in Natural and Synthetic Haploid Genomes

מאת Palacios-Flores, Kim, García-Sotelo, Jair, Castillo, Alejandra, Uribe, Carina, Aguilar, Luis, Morales, Lucía, Gómez-Romero, Laura, Reyes, José, Garciarubio, Alejandro, Boege, Margareta, Dávila, Guillermo
הוצא לאור ב Genetics (2018)

PulmonDB: a curated lung disease gene expression database

מאת Villaseñor-Altamirano, Ana B., Moretto, Marco, Maldonado, Mariel, Zayas-Del Moral, Alejandra, Munguía-Reyes, Adrián, Romero, Yair, García-Sotelo, Jair. S., Aguilar, Luis A., Aldana-Assad, Oscar, Engelen, Kristof, Selman, Moisés, Collado-Vides, Julio, Balderas-Martínez, Yalbi I., Medina-Rivera, Alejandra
הוצא לאור ב Sci Rep (2020)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

מאת Santos-Zavaleta, Alberto, Salgado, Heladia, Gama-Castro, Socorro, Sánchez-Pérez, Mishael, Gómez-Romero, Laura, Ledezma-Tejeida, Daniela, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Muñiz-Rascado, Luis José, Peña-Loredo, Pablo, Ishida-Gutiérrez, Cecilia, Velázquez-Ramírez, David A, Del Moral-Chávez, Víctor, Bonavides-Martínez, César, Méndez-Cruz, Carlos-Francisco, Galagan, James, Collado-Vides, Julio
הוצא לאור ב Nucleic Acids Res (2019)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

מאת Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Moral-Chávez, Víctor Del, Rinaldi, Fabio, Collado-Vides, Julio
הוצא לאור ב Nucleic Acids Res (2016)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

מאת Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S., López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M., Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
יצא לאור 2011

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

מאת Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
יצא לאור 2013