A global analysis of NMR distance constraints from the PDB

Por Vranken, Wim
Publicado em 2007

Relationship between chemical shift value and accessible surface area for all amino acid atoms

Por Vranken, Wim F, Rieping, Wolfgang
Publicado em 2009

Validation of archived chemical shifts through atomic coordinates

Por Rieping, Wolfgang, Vranken, Wim F
Publicado em 2010

An Evolutionary View on Disulfide Bond Connectivities Prediction Using Phylogenetic Trees and a Simple Cysteine Mutation Model

Por Raimondi, Daniele, Orlando, Gabriele, Vranken, Wim F.
Publicado no PLoS One (2015)

ACPYPE - AnteChamber PYthon Parser interfacE

Por Sousa da Silva, Alan W, Vranken, Wim F
Publicado em 2012

Computational approaches for inferring the functions of intrinsically disordered proteins

Por Varadi, Mihaly, Vranken, Wim, Guharoy, Mainak, Tompa, Peter
Publicado no Front Mol Biosci (2015)

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability

Por Pancsa, Rita, Varadi, Mihaly, Tompa, Peter, Vranken, Wim F.
Publicado no Nucleic Acids Res (2016)

Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity

Por Pancsa, Rita, Raimondi, Daniele, Cilia, Elisa, Vranken, Wim F.
Publicado no Biophys J (2016)

The DynaMine webserver: predicting protein dynamics from sequence

Por Cilia, Elisa, Pancsa, Rita, Tompa, Peter, Lenaerts, Tom, Vranken, Wim F.
Publicado em 2014

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

Por Raimondi, Daniele, Orlando, Gabriele, Pancsa, Rita, Khan, Taushif, Vranken, Wim F.
Publicado no Sci Rep (2017)

AmyPro: a database of proteins with validated amyloidogenic regions

Por Varadi, Mihaly, De Baets, Greet, Vranken, Wim F, Tompa, Peter, Pancsa, Rita
Publicado no Nucleic Acids Res (2018)

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins

Por Raimondi, Daniele, Tanyalcin, Ibrahim, Ferté, Julien, Gazzo, Andrea, Orlando, Gabriele, Lenaerts, Tom, Rooman, Marianne, Vranken, Wim
Publicado no Nucleic Acids Res (2017)

Analysis of the structural quality of the CASD-NMR 2013 entries

Por Ragan, Timothy J., Fogh, Rasmus H., Tejero, Roberto, Vranken, Wim, Montelione, Gaetano T., Rosato, Antonio, Vuister, Geerten W.
Publicado no J Biomol NMR (2015)

NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB

Por Doreleijers, Jurgen F., Vranken, Wim F., Schulte, Christopher, Markley, John L., Ulrich, Eldon L., Vriend, Gert, Vuister, Geerten W.
Publicado em 2012

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries

Por Doreleijers, Jurgen F., Vranken, Wim F., Schulte, Christopher, Lin, Jundong, Wedell, Jonathan R., Penkett, Christopher J., Vuister, Geerten W., Vriend, Gert, Markley, John L., Ulrich, Eldon L.
Publicado em 2009

CING: an integrated residue-based structure validation program suite

Por Doreleijers, Jurgen F., Sousa da Silva, Alan W., Krieger, Elmar, Nabuurs, Sander B., Spronk, Christian A. E. M., Stevens, Tim J., Vranken, Wim F., Vriend, Gert, Vuister, Geerten W.
Publicado em 2012

Straightforward and complete deposition of NMR data to the PDBe

Por Penkett, Christopher J., van Ginkel, Glen, Velankar, Sameer, Swaminathan, Jawahar, Ulrich, Eldon L., Mading, Steve, Stevens, Tim J., Fogh, Rasmus H., Gutmanas, Aleksandras, Kleywegt, Gerard J., Henrick, Kim, Vranken, Wim F.
Publicado em 2010

Recommendations of the wwPDB NMR Validation Task Force

Por Montelione, Gaetano T., Nilges, Michael, Bax, Ad, Güntert, Peter, Herrmann, Torsten, Richardson, Jane S., Schwieters, Charles, Vranken, Wim F., Vuister, Geerten W., Wishart, David S., Berman, Helen M., Kleywegt, Gerard J., Markley, John L.
Publicado em 2013

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

Por Piovesan, Damiano, Tabaro, Francesco, Paladin, Lisanna, Necci, Marco, Mičetić, Ivan, Camilloni, Carlo, Davey, Norman, Dosztányi, Zsuzsanna, Mészáros, Bálint, Monzon, Alexander M, Parisi, Gustavo, Schad, Eva, Sormanni, Pietro, Tompa, Peter, Vendruscolo, Michele, Vranken, Wim F, Tosatto, Silvio C E
Publicado no Nucleic Acids Res (2018)

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013

Por Rosato, Antonio, Vranken, Wim, Fogh, Rasmus H., Ragan, Timothy J., Tejero, Roberto, Pederson, Kari, Lee, Hsiau-Wei, Prestegard, James H., Yee, Adelinda, Wu, Bin, Lemak, Alexander, Houliston, Scott, Arrowsmith, Cheryl H., Kennedy, Michael, Acton, Thomas B., Xiao, Rong, Liu, Gaohua, Montelione, Gaetano T., Vuister, Geerten W.
Publicado no J Biomol NMR (2015)