MiRComb: An R Package to Analyse miRNA-mRNA Interactions. Examples across Five Digestive Cancers

por Vila-Casadesús, Maria, Gironella, Meritxell, Lozano, Juan José
Publicado no PLoS One (2016)

Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges

por Bofill-De Ros, Xavier, Santos, Mónica, Vila-Casadesús, Maria, Villanueva, Eneko, Andreu, Nuria, Dierssen, Mara, Fillat, Cristina
Publicado no BMC Genomics (2015)

Deciphering microRNA targets in pancreatic cancer using miRComb R package

por Vila-Casadesús, Maria, Vila-Navarro, Elena, Raimondi, Giulia, Fillat, Cristina, Castells, Antoni, Lozano, Juan José, Gironella, Meritxell
Publicado no Oncotarget (2018)

Mutational Signatures in Cancer (MuSiCa): a web application to implement mutational signatures analysis in cancer samples

por Díaz-Gay, Marcos, Vila-Casadesús, Maria, Franch-Expósito, Sebastià, Hernández-Illán, Eva, Lozano, Juan José, Castellví-Bel, Sergi
Publicado no BMC Bioinformatics (2018)

MicroRNAs Deregulated in Intraductal Papillary Mucinous Neoplasm Converge on Actin Cytoskeleton-Related Pathways That Are Maintained in Pancreatic Ductal Adenocarcinoma

por Fernandez-Castañer, Elena, Vila-Casadesus, Maria, Vila-Navarro, Elena, Parra, Carolina, Lozano, Juan Jose, Castells, Antoni, Gironella, Meritxell
Publicado no Cancers (Basel) (2021)

Novel Circulating miRNA Signatures for Early Detection of Pancreatic Neoplasia

por Vila-Navarro, Elena, Duran-Sanchon, Saray, Vila-Casadesús, Maria, Moreira, Leticia, Ginès, Àngels, Cuatrecasas, Miriam, Lozano, Juan José, Bujanda, Luis, Castells, Antoni, Gironella, Meritxell
Publicado no Clin Transl Gastroenterol (2019)

Transcription-dependent radial distribution of TCF7L2 regulated genes in chromosome territories

por Torabi, Keyvan, Wangsa, Darawalee, Ponsa, Immaculada, Brown, Markus, Bosch, Anna, Vila-Casadesús, Maria, Karpova, Tatiana S., Calvo, Maria, Castells, Antoni, Miró, Rosa, Ried, Thomas, Camps, Jordi
Publicado no Chromosoma (2017)

Selective advantage of trisomic human cells cultured in non-standard conditions

por Rutledge, Samuel D., Douglas, Temple A., Nicholson, Joshua M., Vila-Casadesús, Maria, Kantzler, Courtney L., Wangsa, Darawalee, Barroso-Vilares, Monika, Kale, Shiv D., Logarinho, Elsa, Cimini, Daniela
Publicado no Sci Rep (2016)

MiR-93 is related to poor prognosis in pancreatic cancer and promotes tumor progression by targeting microtubule dynamics

por Vila-Navarro, Elena, Fernandez-Castañer, Elena, Rovira-Rigau, Maria, Raimondi, Giulia, Vila-Casadesus, Maria, Lozano, Juan Jose, Soubeyran, Philippe, Iovanna, Juan, Castells, Antoni, Fillat, Cristina, Gironella, Meritxell
Publicado no Oncogenesis (2020)

MicroRNAs for Detection of Pancreatic Neoplasia: Biomarker Discovery by Next-generation Sequencing and Validation in 2 Independent Cohorts

por Vila-Navarro, Elena, Vila-Casadesús, Maria, Moreira, Leticia, Duran-Sanchon, Saray, Sinha, Rupal, Ginés, Àngels, Fernández-Esparrach, Glòria, Miquel, Rosa, Cuatrecasas, Miriam, Castells, Antoni, Lozano, Juan José, Gironella, Meritxell
Publicado no Ann Surg (2017)

Cross-sectional study of human coding- and non-coding RNAs in progressive stages of Helicobacter pylori infection

por Lario, Sergio, Ramírez-Lázaro, María J., González-Lahera, Aintzane, Lavín, José L., Vila-Casadesús, Maria, Quílez, María E., Brunet-Vega, Anna, Lozano, Juan J., Aransay, Ana M., Calvet, Xavier
Publicado no Sci Data (2020)

CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications

por Franch-Expósito, Sebastià, Bassaganyas, Laia, Vila-Casadesús, Maria, Hernández-Illán, Eva, Esteban-Fabró, Roger, Díaz-Gay, Marcos, Lozano, Juan José, Castells, Antoni, Llovet, Josep Maria, Castellví-Bel, Sergi, Camps, Jordi
Publicado no eLife (2020)

Near-tetraploid cancer cells show chromosome instability triggered by replication stress and exhibit enhanced invasiveness

por Wangsa, Darawalee, Quintanilla, Isabel, Torabi, Keyvan, Vila-Casadesús, Maria, Ercilla, Amaia, Klus, Gregory, Yuce, Zeynep, Galofré, Claudia, Cuatrecasas, Miriam, Lozano, Juan José, Agell, Neus, Cimini, Daniela, Castells, Antoni, Ried, Thomas, Camps, Jordi
Publicado no FASEB J (2018)

Copy number alteration burden differentially impacts immune profiles and molecular features of hepatocellular carcinoma

por Bassaganyas, Laia, Pinyol, Roser, Esteban-Fabró, Roger, Torrens, Laura, Torrecilla, Sara, Willoughby, Catherine E., Franch-Expósito, Sebastià, Vila-Casadesús, Maria, Salaverria, Itziar, Montal, Robert, Mazzaferro, Vincenzo, Camps, Jordi, Sia, Daniela, Llovet, Josep M
Publicado no Clin Cancer Res (2020)

Whsc1 links pluripotency exit with mesendoderm specification

por Tian, Tian V., Di Stefano, Bruno, Stik, Grégoire, Vila-Casadesús, Maria, Sardina, José Luis, Vidal, Enrique, Dasti, Alessandro, Morales, Carolina Segura, De Andres Aguayo, Luisa, Gomez, Antonio, Goldmann, Johanna, Jaenisch, Rudolf, Graf, Thomas
Publicado no Nat Cell Biol (2019)

Induced Chromosomal Aneuploidy Results in Global and Consistent Deregulation of the Transcriptome of Cancer Cells()

por Wangsa, Darawalee, Braun, Rüdiger, Stuelten, Christina H., Brown, Markus, Bauer, Kerry M., Emons, Georg, Weston, Leigh A., Hu, Yue, Yang, Howard H., Vila-Casadesús, Maria, Lee, Maxwell P., Brauer, Philip, Warner, Lidia, Upender, Madhvi, Hummon, Amanda B., Camps, Jordi, Ried, Thomas
Publicado no Neoplasia (2019)

Integrative miRNA and Gene Expression Profiling Analysis of Human Quiescent Hepatic Stellate Cells

por Coll, Mar, Taghdouini, Adil El, Perea, Luis, Mannaerts, Inge, Vila-Casadesús, Maria, Blaya, Delia, Rodrigo-Torres, Daniel, Affò, Silvia, Morales-Ibanez, Oriol, Graupera, Isabel, Lozano, Juan José, Najimi, Mustapha, Sokal, Etienne, Lambrecht, Joeri, Ginès, Pere, van Grunsven, Leo A., Sancho-Bru, Pau
Publicado no Sci Rep (2015)

The Fanconi anemia DNA damage repair pathway in the spotlight for germline predisposition to colorectal cancer

por Esteban-Jurado, Clara, Franch-Expósito, Sebastià, Muñoz, Jenifer, Ocaña, Teresa, Carballal, Sabela, López-Cerón, Maria, Cuatrecasas, Miriam, Vila-Casadesús, Maria, Lozano, Juan José, Serra, Enric, Beltran, Sergi, Brea-Fernández, Alejandro, Ruiz-Ponte, Clara, Castells, Antoni, Bujanda, Luis, Garre, Pilar, Caldés, Trinidad, Cubiella, Joaquín, Balaguer, Francesc, Castellví-Bel, Sergi
Publicado no Eur J Hum Genet (2016)

Whole-exome sequencing identifies rare pathogenic variants in new predisposition genes for familial colorectal cancer

por Esteban-Jurado, Clara, Vila-Casadesús, Maria, Garre, Pilar, Lozano, Juan José, Pristoupilova, Anna, Beltran, Sergi, Muñoz, Jenifer, Ocaña, Teresa, Balaguer, Francesc, López-Cerón, Maria, Cuatrecasas, Miriam, Franch-Expósito, Sebastià, Piqué, Josep M., Castells, Antoni, Carracedo, Angel, Ruiz-Ponte, Clara, Abulí, Anna, Bessa, Xavier, Andreu, Montserrat, Bujanda, Luis, Caldés, Trinidad, Castellví-Bel, Sergi
Publicado no Genet Med (2015)

Colon capsule endoscopy versus CT colonography in FIT-positive colorectal cancer screening subjects: a prospective randomised trial—the VICOCA study

por González-Suárez, Begoña, Pagés, Mario, Araujo, Isis Karina, Romero, Cristina, Rodríguez de Miguel, Cristina, Ayuso, Juan Ramón, Pozo, Àngels, Vila-Casadesús, Maria, Serradesanferm, Anna, Ginès, Àngels, Fernández-Esparrach, Glòria, Pellisé, Maria, López-Cerón, María, Flores, David, Córdova, Henry, Sendino, Oriol, Grau, Jaume, Llach, Josep, Serra-Burriel, Miquel, Cárdenas, Andrés, Balaguer, Francesc, Castells, Antoni
Publicado no BMC Med (2020)