A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling

ανά Ugarte, Ari, Vicedomini, Riccardo, Bernardes, Juliana, Carbone, Alessandra
Τόπος έκδοσης Microbiome (2018)

Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A

ανά David, Laurent, Vicedomini, Riccardo, Richard, Hugues, Carbone, Alessandra
Τόπος έκδοσης Bioinformatics (2020)

MyCLADE: a multi-source domain annotation server for sequence functional exploration

ανά Vicedomini, Riccardo, Blachon, Clémence, Oteri, Francesco, Carbone, Alessandra
Τόπος έκδοσης Nucleic Acids Res (2021)

Strainberry: automated strain separation in low-complexity metagenomes using long reads

ανά Vicedomini, Riccardo, Quince, Christopher, Darling, Aaron E., Chikhi, Rayan
Τόπος έκδοσης Nat Commun (2021)

GAM-NGS: genomic assemblies merger for next generation sequencing

ανά Vicedomini, Riccardo, Vezzi, Francesco, Scalabrin, Simone, Arvestad, Lars, Policriti, Alberto
Έκδοση 2013

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

ανά Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Έκδοση 2013