I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples

av Ahmed, Zeeshan, Ucar, Duygu
I publikationen PeerJ (2017)

Amplification of the bromodomain-containing protein 4 gene in ovarian high-grade serous carcinoma is associated with worse prognosis and survival

av UCAR, DUYGU, LIN, DOUGLAS I.
I publikationen Mol Clin Oncol (2015)

A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories

av Yang, Hui, Parthasarathy, Srinivasan, Ucar, Duygu
Publicerad 2007

Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering

av Ucar, Duygu, Hu, Qingyang, Tan, Kai
Publicerad 2011

Discover regulatory DNA elements using chromatin signatures and artificial neural network

av Firpi, Hiram A., Ucar, Duygu, Tan, Kai
Publicerad 2010

Predicting functionality of protein–DNA interactions by integrating diverse evidence

av Ucar, Duygu, Beyer, Andreas, Parthasarathy, Srinivasan, Workman, Christopher T.
Publicerad 2009

Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus

av Gupta, Rakhi, Wills, Andrea, Ucar, Duygu, Baker, Julie
I publikationen Dev Biol (2014)

Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function

av Stitzel, Michael L., Kycia, Ina, Kursawe, Romy, Ucar, Duygu
I publikationen Curr Diab Rep (2015)

Genomics of Islet (Dys)function and Type 2 Diabetes

av Lawlor, Nathan, Khetan, Shubham, Ucar, Duygu, Stitzel, Michael L.
I publikationen Trends Genet (2017)

V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data

av Lawlor, Nathan, Marquez, Eladio J, Lee, Donghyung, Ucar, Duygu
I publikationen Bioinformatics (2020)

Computational inference of H3K4me3 and H3K27ac domain length

av Zubek, Julian, Stitzel, Michael L., Ucar, Duygu, Plewczynski, Dariusz M.
I publikationen PeerJ (2016)

Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA)

av Lee, Donghyung, Cheng, Anthony, Lawlor, Nathan, Bolisetty, Mohan, Ucar, Duygu
I publikationen Sci Rep (2018)

Computational inference of a genomic pluripotency signature in human and mouse stem cells

av Kurum, Esra, Benayoun, Bérénice A., Malhotra, Ankit, George, Joshy, Ucar, Duygu
I publikationen Biol Direct (2016)

Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts

av Lawlor, Nathan, Youn, Ahrim, Kursawe, Romy, Ucar, Duygu, Stitzel, Michael L.
I publikationen Sci Rep (2017)

A neural network based model effectively predicts enhancers from clinical ATAC-seq samples

av Thibodeau, Asa, Uyar, Asli, Khetan, Shubham, Stitzel, Michael L., Ucar, Duygu
I publikationen Sci Rep (2018)

BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test

av Youn, Ahrim, Marquez, Eladio J, Lawlor, Nathan, Stitzel, Michael L, Ucar, Duygu
I publikationen Nucleic Acids Res (2019)

The lethal sex gap: COVID-19

av Márquez, Eladio J., Trowbridge, Jennifer, Kuchel, George A., Banchereau, Jacques, Ucar, Duygu
I publikationen Immun Ageing (2020)

Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin

av Thibodeau, Asa, Márquez, Eladio J., Shin, Dong-Guk, Vera-Licona, Paola, Ucar, Duygu
I publikationen Sci Rep (2017)

Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells

av George, Joshy, Uyar, Asli, Young, Kira, Kuffler, Lauren, Waldron-Francis, Kaiden, Marquez, Eladio, Ucar, Duygu, Trowbridge, Jennifer J.
I publikationen Nat Commun (2016)

Type 2 Diabetes–Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets

av Khetan, Shubham, Kursawe, Romy, Youn, Ahrim, Lawlor, Nathan, Jillette, Alexandria, Marquez, Eladio J., Ucar, Duygu, Stitzel, Michael L.
I publikationen Diabetes (2018)