I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples

od Ahmed, Zeeshan, Ucar, Duygu
Wydane w PeerJ (2017)

Amplification of the bromodomain-containing protein 4 gene in ovarian high-grade serous carcinoma is associated with worse prognosis and survival

od UCAR, DUYGU, LIN, DOUGLAS I.
Wydane w Mol Clin Oncol (2015)

A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories

od Yang, Hui, Parthasarathy, Srinivasan, Ucar, Duygu
Wydane 2007

Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering

od Ucar, Duygu, Hu, Qingyang, Tan, Kai
Wydane 2011

Discover regulatory DNA elements using chromatin signatures and artificial neural network

od Firpi, Hiram A., Ucar, Duygu, Tan, Kai
Wydane 2010

Predicting functionality of protein–DNA interactions by integrating diverse evidence

od Ucar, Duygu, Beyer, Andreas, Parthasarathy, Srinivasan, Workman, Christopher T.
Wydane 2009

Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus

od Gupta, Rakhi, Wills, Andrea, Ucar, Duygu, Baker, Julie
Wydane w Dev Biol (2014)

Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function

od Stitzel, Michael L., Kycia, Ina, Kursawe, Romy, Ucar, Duygu
Wydane w Curr Diab Rep (2015)

Genomics of Islet (Dys)function and Type 2 Diabetes

od Lawlor, Nathan, Khetan, Shubham, Ucar, Duygu, Stitzel, Michael L.
Wydane w Trends Genet (2017)

V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data

od Lawlor, Nathan, Marquez, Eladio J, Lee, Donghyung, Ucar, Duygu
Wydane w Bioinformatics (2020)

Computational inference of H3K4me3 and H3K27ac domain length

od Zubek, Julian, Stitzel, Michael L., Ucar, Duygu, Plewczynski, Dariusz M.
Wydane w PeerJ (2016)

Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA)

od Lee, Donghyung, Cheng, Anthony, Lawlor, Nathan, Bolisetty, Mohan, Ucar, Duygu
Wydane w Sci Rep (2018)

Computational inference of a genomic pluripotency signature in human and mouse stem cells

od Kurum, Esra, Benayoun, Bérénice A., Malhotra, Ankit, George, Joshy, Ucar, Duygu
Wydane w Biol Direct (2016)

Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts

od Lawlor, Nathan, Youn, Ahrim, Kursawe, Romy, Ucar, Duygu, Stitzel, Michael L.
Wydane w Sci Rep (2017)

A neural network based model effectively predicts enhancers from clinical ATAC-seq samples

od Thibodeau, Asa, Uyar, Asli, Khetan, Shubham, Stitzel, Michael L., Ucar, Duygu
Wydane w Sci Rep (2018)

BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test

od Youn, Ahrim, Marquez, Eladio J, Lawlor, Nathan, Stitzel, Michael L, Ucar, Duygu
Wydane w Nucleic Acids Res (2019)

The lethal sex gap: COVID-19

od Márquez, Eladio J., Trowbridge, Jennifer, Kuchel, George A., Banchereau, Jacques, Ucar, Duygu
Wydane w Immun Ageing (2020)

Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin

od Thibodeau, Asa, Márquez, Eladio J., Shin, Dong-Guk, Vera-Licona, Paola, Ucar, Duygu
Wydane w Sci Rep (2017)

Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells

od George, Joshy, Uyar, Asli, Young, Kira, Kuffler, Lauren, Waldron-Francis, Kaiden, Marquez, Eladio, Ucar, Duygu, Trowbridge, Jennifer J.
Wydane w Nat Commun (2016)

Type 2 Diabetes–Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets

od Khetan, Shubham, Kursawe, Romy, Youn, Ahrim, Lawlor, Nathan, Jillette, Alexandria, Marquez, Eladio J., Ucar, Duygu, Stitzel, Michael L.
Wydane w Diabetes (2018)