Rural and urban microbiota: To be or not to be?

od Tyakht, Alexander V, Alexeev, Dmitry G, Popenko, Anna S, Kostryukova, Elena S, Govorun, Vadim M
Izdano 2014

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

od Dubinkina, Veronika B., Ischenko, Dmitry S., Ulyantsev, Vladimir I., Tyakht, Alexander V., Alexeev, Dmitry G.
Izdano u BMC Bioinformatics (2016)

Benchmark of software tools for prokaryotic chromosomal interaction domain identification

od Magnitov, Mikhail D, Kuznetsova, Veronika S, Ulianov, Sergey V, Razin, Sergey V, Tyakht, Alexander V
Izdano u Bioinformatics (2020)

ResistoMap—online visualization of human gut microbiota antibiotic resistome

od Yarygin, Konstantin S, Kovarsky, Boris A, Bibikova, Tatyana S, Melnikov, Damir S, Tyakht, Alexander V, Alexeev, Dmitry G
Izdano u Bioinformatics (2017)

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

od Iablokov, Stanislav N., Klimenko, Natalia S., Efimova, Daria A., Shashkova, Tatiana, Novichkov, Pavel S., Rodionov, Dmitry A., Tyakht, Alexander V.
Izdano u Front Mol Biosci (2021)

Co-occurrence patterns of bacteria within microbiome of Moscow subway

od Klimenko, Natalia S., Tyakht, Alexander V., Toshchakov, Stepan V., Shevchenko, Margarita A., Korzhenkov, Aleksei A., Afshinnekoo, Ebrahim, Mason, Christopher E., Alexeev, Dmitry G.
Izdano u Comput Struct Biotechnol J (2020)

Gut Microbiota in Patients with Different Metabolic Statuses: Moscow Study

od Kashtanova, Daria A., Tkacheva, Olga N., Doudinskaya, Ekaterina N., Strazhesko, Irina D., Kotovskaya, Yulia V., Popenko, Anna S., Tyakht, Alexander V., Alexeev, Dmitry G.
Izdano u Microorganisms (2018)

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads

od Tyakht, Alexander V, Popenko, Anna S, Belenikin, Maxim S, Altukhov, Ilya A, Pavlenko, Alexander V, Kostryukova, Elena S, Selezneva, Oksana V, Larin, Andrei K, Karpova, Irina Y, Alexeev, Dmitry G
Izdano 2012

Microbiome-Metabolome Signature of Acute Kidney Injury

od Andrianova, Nadezda V., Popkov, Vasily A., Klimenko, Natalia S., Tyakht, Alexander V., Baydakova, Galina V., Frolova, Olga Y., Zorova, Ljubava D., Pevzner, Irina B., Zorov, Dmitry B., Plotnikov, Egor Y.
Izdano u Metabolites (2020)

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

od Tyakht, Alexander V, Ilina, Elena N, Alexeev, Dmitry G, Ischenko, Dmitry S, Gorbachev, Alexey Y, Semashko, Tatiana A, Larin, Andrei K, Selezneva, Oksana V, Kostryukova, Elena S, Karalkin, Pavel A, Vakhrushev, Igor V, Kurbatov, Leonid K, Archakov, Alexander I, Govorun, Vadim M
Izdano u BMC Genomics (2014)

Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori

od Prianichnikov, Nikita A., Malakhova, Maja V., Babenko, Vlad V., Larin, Andrei K., Olekhnovich, Evgenii I., Starikova, Elizaveta V., Chuvelev, Dmitry I., Glushchenko, Oksana E., Samoilov, Andrei E., Manolov, Alexander I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Ilina, Elena N., Kostryukova, Elena S.
Izdano u Data Brief (2017)

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy

od Glushchenko, Oksana E., Samoilov, Andrei E., Olekhnovich, Evgenii I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrei K., Kostryukova, Elena S., Malakhova, Maja V., Ilina, Elena N., Abdulkhakov, Rustem A., Safina, Dilyara I., Grigoryeva, Tatiana V., Abdulkhakov, Sayar R., Govorun, Vadim M.
Izdano u Data Brief (2017)

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project

od Klimenko, Natalia S., Tyakht, Alexander V., Popenko, Anna S., Vasiliev, Anatoly S., Altukhov, Ilya A., Ischenko, Dmitry S., Shashkova, Tatiana I., Efimova, Daria A., Nikogosov, Dmitri A., Osipenko, Dmitrii A., Musienko, Sergey V., Selezneva, Kseniya S., Baranova, Ancha, Kurilshikov, Alexander M., Toshchakov, Stepan M., Korzhenkov, Aleksei A., Samarov, Nazar I., Shevchenko, Margarita A., Tepliuk, Alina V., Alexeev, Dmitry G.
Izdano u Nutrients (2018)

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis

od Tyakht, Alexander V., Dubinkina, Veronika B., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitski, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Izdano u Data Brief (2017)

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity

od Terekhov, Stanislav S., Smirnov, Ivan V., Stepanova, Anastasiya V., Bobik, Tatyana V., Mokrushina, Yuliana A., Ponomarenko, Natalia A., Belogurov, Alexey A., Rubtsova, Maria P., Kartseva, Olga V., Gomzikova, Marina O., Moskovtsev, Alexey A., Bukatin, Anton S., Dubina, Michael V., Kostryukova, Elena S., Babenko, Vladislav V., Vakhitova, Maria T., Manolov, Alexander I., Malakhova, Maja V., Kornienko, Maria A., Tyakht, Alexander V., Vanyushkina, Anna A., Ilina, Elena N., Masson, Patrick, Gabibov, Alexander G., Altman, Sidney
Izdano u Proc Natl Acad Sci U S A (2017)

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

od Dubinkina, Veronika B., Tyakht, Alexander V., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitsky, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Izdano u Microbiome (2017)

Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy

od Olekhnovich, Evgenii I., Manolov, Alexander I., Samoilov, Andrey E., Prianichnikov, Nikita A., Malakhova, Maja V., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrey K., Kovarsky, Boris A., Starikova, Elizaveta V., Glushchenko, Oksana E., Safina, Dilyara D., Markelova, Maria I., Boulygina, Eugenia A., Khusnutdinova, Dilyara R., Malanin, Sergey Y., Abdulkhakov, Sayar R., Abdulkhakov, Rustam A., Grigoryeva, Tatiana V., Kostryukova, Elena S., Govorun, Vadim M., Ilina, Elena N.
Izdano u Front Microbiol (2019)

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

od Tyakht, Alexander V., Manolov, Alexander I., Kanygina, Alexandra V., Ischenko, Dmitry S., Kovarsky, Boris A., Popenko, Anna S., Pavlenko, Alexander V., Elizarova, Anna V., Rakitina, Daria V., Baikova, Julia P., Ladygina, Valentina G., Kostryukova, Elena S., Karpova, Irina Y., Semashko, Tatyana A., Larin, Andrei K., Grigoryeva, Tatyana V., Sinyagina, Mariya N., Malanin, Sergei Y., Shcherbakov, Petr L., Kharitonova, Anastasiya Y., Khalif, Igor L., Shapina, Marina V., Maev, Igor V., Andreev, Dmitriy N., Belousova, Elena A., Buzunova, Yulia M., Alexeev, Dmitry G., Govorun, Vadim M.
Izdano u BMC Genomics (2018)

Human gut microbiota community structures in urban and rural populations in Russia

od Tyakht, Alexander V., Kostryukova, Elena S., Popenko, Anna S., Belenikin, Maxim S., Pavlenko, Alexander V., Larin, Andrey K., Karpova, Irina Y., Selezneva, Oksana V., Semashko, Tatyana A., Ospanova, Elena A., Babenko, Vladislav V., Maev, Igor V., Cheremushkin, Sergey V., Kucheryavyy, Yuriy A., Shcherbakov, Petr L., Grinevich, Vladimir B., Efimov, Oleg I., Sas, Evgenii I., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Lyalyukova, Elena A., Livzan, Maria A., Vlassov, Valentin V., Sagdeev, Renad Z., Tsukanov, Vladislav V., Osipenko, Marina F., Kozlova, Irina V., Tkachev, Alexander V., Sergienko, Valery I., Alexeev, Dmitry G., Govorun, Vadim M.
Izdano 2013

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

od Edwards, Robert A., Vega, Alejandro A., Norman, Holly M., Ohaeri, Maria, Levi, Kyle, Dinsdale, Elizabeth A., Cinek, Ondrej, Aziz, Ramy K., McNair, Katelyn, Barr, Jeremy J., Bibby, Kyle, Brouns, Stan J. J., Cazares, Adrian, de Jonge, Patrick A., Desnues, Christelle, Díaz Muñoz, Samuel L., Fineran, Peter C., Kurilshikov, Alexander, Lavigne, Rob, Mazankova, Karla, McCarthy, David T., Nobrega, Franklin L., Muñoz, Alejandro Reyes, Tapia, German, Trefault, Nicole, Tyakht, Alexander V., Vinuesa, Pablo, Wagemans, Jeroen, Zhernakova, Alexandra, Aarestrup, Frank M., Ahmadov, Gunduz, Alassaf, Abeer, Anton, Josefa, Asangba, Abigail, Billings, Emma K., Cantu, Vito Adrian, Carlton, Jane M., Cazares, Daniel, Cho, Gyu-Sung, Condeff, Tess, Cortés, Pilar, Cranfield, Mike, Cuevas, Daniel A., De la Iglesia, Rodrigo, Decewicz, Przemyslaw, Doane, Michael P., Dominy, Nathaniel J., Dziewit, Lukasz, Elwasila, Bashir Mukhtar, Eren, A. Murat, Franz, Charles, Fu, Jingyuan, Garcia-Aljaro, Cristina, Ghedin, Elodie, Gulino, Kristen M., Haggerty, John M., Head, Steven R., Hendriksen, Rene S., Hill, Colin, Hyöty, Heikki, Ilina, Elena N., Irwin, Mitchell T., Jeffries, Thomas C., Jofre, Juan, Junge, Randall E., Kelley, Scott T., Mirzaei, Mohammadali Khan, Kowalewski, Martin, Kumaresan, Deepak, Leigh, Steven R., Lipson, David, Lisitsyna, Eugenia S., Llagostera, Montserrat, Maritz, Julia M., Marr, Linsey C., McCann, Angela, Molshanski-Mor, Shahar, Monteiro, Silvia, Moreira-Grez, Benjamin, Morris, Megan, Mugisha, Lawrence, Muniesa, Maite, Neve, Horst, Nguyen, Nam-phuong, Nigro, Olivia D., Nilsson, Anders S., O’Connell, Taylor, Odeh, Rasha, Oliver, Andrew, Piuri, Mariana, Prussin, Aaron J., Qimron, Udi, Quan, Zhe-Xue, Rainetova, Petra, Ramírez-Rojas, Adán, Raya, Raul, Reasor, Kim, Rice, Gillian A. O., Rossi, Alessandro, Santos, Ricardo, Shimashita, John, Stachler, Elyse N., Stene, Lars C., Strain, Ronan, Stumpf, Rebecca, Torres, Pedro J., Twaddle, Alan, Ibekwe, MaryAnn Ugochi, Villagra, Nicolás, Wandro, Stephen, White, Bryan, Whiteley, Andy, Whiteson, Katrine L., Wijmenga, Cisca, Zambrano, Maria M., Zschach, Henrike, Dutilh, Bas E.
Izdano u Nat Microbiol (2019)