Rural and urban microbiota: To be or not to be?

অনুযায়ী Tyakht, Alexander V, Alexeev, Dmitry G, Popenko, Anna S, Kostryukova, Elena S, Govorun, Vadim M
প্রকাশিত 2014

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

অনুযায়ী Dubinkina, Veronika B., Ischenko, Dmitry S., Ulyantsev, Vladimir I., Tyakht, Alexander V., Alexeev, Dmitry G.
প্রকাশিত BMC Bioinformatics (2016)

Benchmark of software tools for prokaryotic chromosomal interaction domain identification

অনুযায়ী Magnitov, Mikhail D, Kuznetsova, Veronika S, Ulianov, Sergey V, Razin, Sergey V, Tyakht, Alexander V
প্রকাশিত Bioinformatics (2020)

ResistoMap—online visualization of human gut microbiota antibiotic resistome

অনুযায়ী Yarygin, Konstantin S, Kovarsky, Boris A, Bibikova, Tatyana S, Melnikov, Damir S, Tyakht, Alexander V, Alexeev, Dmitry G
প্রকাশিত Bioinformatics (2017)

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

অনুযায়ী Iablokov, Stanislav N., Klimenko, Natalia S., Efimova, Daria A., Shashkova, Tatiana, Novichkov, Pavel S., Rodionov, Dmitry A., Tyakht, Alexander V.
প্রকাশিত Front Mol Biosci (2021)

Co-occurrence patterns of bacteria within microbiome of Moscow subway

অনুযায়ী Klimenko, Natalia S., Tyakht, Alexander V., Toshchakov, Stepan V., Shevchenko, Margarita A., Korzhenkov, Aleksei A., Afshinnekoo, Ebrahim, Mason, Christopher E., Alexeev, Dmitry G.
প্রকাশিত Comput Struct Biotechnol J (2020)

Gut Microbiota in Patients with Different Metabolic Statuses: Moscow Study

অনুযায়ী Kashtanova, Daria A., Tkacheva, Olga N., Doudinskaya, Ekaterina N., Strazhesko, Irina D., Kotovskaya, Yulia V., Popenko, Anna S., Tyakht, Alexander V., Alexeev, Dmitry G.
প্রকাশিত Microorganisms (2018)

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads

অনুযায়ী Tyakht, Alexander V, Popenko, Anna S, Belenikin, Maxim S, Altukhov, Ilya A, Pavlenko, Alexander V, Kostryukova, Elena S, Selezneva, Oksana V, Larin, Andrei K, Karpova, Irina Y, Alexeev, Dmitry G
প্রকাশিত 2012

Microbiome-Metabolome Signature of Acute Kidney Injury

অনুযায়ী Andrianova, Nadezda V., Popkov, Vasily A., Klimenko, Natalia S., Tyakht, Alexander V., Baydakova, Galina V., Frolova, Olga Y., Zorova, Ljubava D., Pevzner, Irina B., Zorov, Dmitry B., Plotnikov, Egor Y.
প্রকাশিত Metabolites (2020)

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

অনুযায়ী Tyakht, Alexander V, Ilina, Elena N, Alexeev, Dmitry G, Ischenko, Dmitry S, Gorbachev, Alexey Y, Semashko, Tatiana A, Larin, Andrei K, Selezneva, Oksana V, Kostryukova, Elena S, Karalkin, Pavel A, Vakhrushev, Igor V, Kurbatov, Leonid K, Archakov, Alexander I, Govorun, Vadim M
প্রকাশিত BMC Genomics (2014)

Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori

অনুযায়ী Prianichnikov, Nikita A., Malakhova, Maja V., Babenko, Vlad V., Larin, Andrei K., Olekhnovich, Evgenii I., Starikova, Elizaveta V., Chuvelev, Dmitry I., Glushchenko, Oksana E., Samoilov, Andrei E., Manolov, Alexander I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Ilina, Elena N., Kostryukova, Elena S.
প্রকাশিত Data Brief (2017)

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy

অনুযায়ী Glushchenko, Oksana E., Samoilov, Andrei E., Olekhnovich, Evgenii I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrei K., Kostryukova, Elena S., Malakhova, Maja V., Ilina, Elena N., Abdulkhakov, Rustem A., Safina, Dilyara I., Grigoryeva, Tatiana V., Abdulkhakov, Sayar R., Govorun, Vadim M.
প্রকাশিত Data Brief (2017)

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project

অনুযায়ী Klimenko, Natalia S., Tyakht, Alexander V., Popenko, Anna S., Vasiliev, Anatoly S., Altukhov, Ilya A., Ischenko, Dmitry S., Shashkova, Tatiana I., Efimova, Daria A., Nikogosov, Dmitri A., Osipenko, Dmitrii A., Musienko, Sergey V., Selezneva, Kseniya S., Baranova, Ancha, Kurilshikov, Alexander M., Toshchakov, Stepan M., Korzhenkov, Aleksei A., Samarov, Nazar I., Shevchenko, Margarita A., Tepliuk, Alina V., Alexeev, Dmitry G.
প্রকাশিত Nutrients (2018)

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis

অনুযায়ী Tyakht, Alexander V., Dubinkina, Veronika B., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitski, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
প্রকাশিত Data Brief (2017)

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity

অনুযায়ী Terekhov, Stanislav S., Smirnov, Ivan V., Stepanova, Anastasiya V., Bobik, Tatyana V., Mokrushina, Yuliana A., Ponomarenko, Natalia A., Belogurov, Alexey A., Rubtsova, Maria P., Kartseva, Olga V., Gomzikova, Marina O., Moskovtsev, Alexey A., Bukatin, Anton S., Dubina, Michael V., Kostryukova, Elena S., Babenko, Vladislav V., Vakhitova, Maria T., Manolov, Alexander I., Malakhova, Maja V., Kornienko, Maria A., Tyakht, Alexander V., Vanyushkina, Anna A., Ilina, Elena N., Masson, Patrick, Gabibov, Alexander G., Altman, Sidney
প্রকাশিত Proc Natl Acad Sci U S A (2017)

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

অনুযায়ী Dubinkina, Veronika B., Tyakht, Alexander V., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitsky, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
প্রকাশিত Microbiome (2017)

Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy

অনুযায়ী Olekhnovich, Evgenii I., Manolov, Alexander I., Samoilov, Andrey E., Prianichnikov, Nikita A., Malakhova, Maja V., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrey K., Kovarsky, Boris A., Starikova, Elizaveta V., Glushchenko, Oksana E., Safina, Dilyara D., Markelova, Maria I., Boulygina, Eugenia A., Khusnutdinova, Dilyara R., Malanin, Sergey Y., Abdulkhakov, Sayar R., Abdulkhakov, Rustam A., Grigoryeva, Tatiana V., Kostryukova, Elena S., Govorun, Vadim M., Ilina, Elena N.
প্রকাশিত Front Microbiol (2019)

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

অনুযায়ী Tyakht, Alexander V., Manolov, Alexander I., Kanygina, Alexandra V., Ischenko, Dmitry S., Kovarsky, Boris A., Popenko, Anna S., Pavlenko, Alexander V., Elizarova, Anna V., Rakitina, Daria V., Baikova, Julia P., Ladygina, Valentina G., Kostryukova, Elena S., Karpova, Irina Y., Semashko, Tatyana A., Larin, Andrei K., Grigoryeva, Tatyana V., Sinyagina, Mariya N., Malanin, Sergei Y., Shcherbakov, Petr L., Kharitonova, Anastasiya Y., Khalif, Igor L., Shapina, Marina V., Maev, Igor V., Andreev, Dmitriy N., Belousova, Elena A., Buzunova, Yulia M., Alexeev, Dmitry G., Govorun, Vadim M.
প্রকাশিত BMC Genomics (2018)

Human gut microbiota community structures in urban and rural populations in Russia

অনুযায়ী Tyakht, Alexander V., Kostryukova, Elena S., Popenko, Anna S., Belenikin, Maxim S., Pavlenko, Alexander V., Larin, Andrey K., Karpova, Irina Y., Selezneva, Oksana V., Semashko, Tatyana A., Ospanova, Elena A., Babenko, Vladislav V., Maev, Igor V., Cheremushkin, Sergey V., Kucheryavyy, Yuriy A., Shcherbakov, Petr L., Grinevich, Vladimir B., Efimov, Oleg I., Sas, Evgenii I., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Lyalyukova, Elena A., Livzan, Maria A., Vlassov, Valentin V., Sagdeev, Renad Z., Tsukanov, Vladislav V., Osipenko, Marina F., Kozlova, Irina V., Tkachev, Alexander V., Sergienko, Valery I., Alexeev, Dmitry G., Govorun, Vadim M.
প্রকাশিত 2013

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

অনুযায়ী Edwards, Robert A., Vega, Alejandro A., Norman, Holly M., Ohaeri, Maria, Levi, Kyle, Dinsdale, Elizabeth A., Cinek, Ondrej, Aziz, Ramy K., McNair, Katelyn, Barr, Jeremy J., Bibby, Kyle, Brouns, Stan J. J., Cazares, Adrian, de Jonge, Patrick A., Desnues, Christelle, Díaz Muñoz, Samuel L., Fineran, Peter C., Kurilshikov, Alexander, Lavigne, Rob, Mazankova, Karla, McCarthy, David T., Nobrega, Franklin L., Muñoz, Alejandro Reyes, Tapia, German, Trefault, Nicole, Tyakht, Alexander V., Vinuesa, Pablo, Wagemans, Jeroen, Zhernakova, Alexandra, Aarestrup, Frank M., Ahmadov, Gunduz, Alassaf, Abeer, Anton, Josefa, Asangba, Abigail, Billings, Emma K., Cantu, Vito Adrian, Carlton, Jane M., Cazares, Daniel, Cho, Gyu-Sung, Condeff, Tess, Cortés, Pilar, Cranfield, Mike, Cuevas, Daniel A., De la Iglesia, Rodrigo, Decewicz, Przemyslaw, Doane, Michael P., Dominy, Nathaniel J., Dziewit, Lukasz, Elwasila, Bashir Mukhtar, Eren, A. Murat, Franz, Charles, Fu, Jingyuan, Garcia-Aljaro, Cristina, Ghedin, Elodie, Gulino, Kristen M., Haggerty, John M., Head, Steven R., Hendriksen, Rene S., Hill, Colin, Hyöty, Heikki, Ilina, Elena N., Irwin, Mitchell T., Jeffries, Thomas C., Jofre, Juan, Junge, Randall E., Kelley, Scott T., Mirzaei, Mohammadali Khan, Kowalewski, Martin, Kumaresan, Deepak, Leigh, Steven R., Lipson, David, Lisitsyna, Eugenia S., Llagostera, Montserrat, Maritz, Julia M., Marr, Linsey C., McCann, Angela, Molshanski-Mor, Shahar, Monteiro, Silvia, Moreira-Grez, Benjamin, Morris, Megan, Mugisha, Lawrence, Muniesa, Maite, Neve, Horst, Nguyen, Nam-phuong, Nigro, Olivia D., Nilsson, Anders S., O’Connell, Taylor, Odeh, Rasha, Oliver, Andrew, Piuri, Mariana, Prussin, Aaron J., Qimron, Udi, Quan, Zhe-Xue, Rainetova, Petra, Ramírez-Rojas, Adán, Raya, Raul, Reasor, Kim, Rice, Gillian A. O., Rossi, Alessandro, Santos, Ricardo, Shimashita, John, Stachler, Elyse N., Stene, Lars C., Strain, Ronan, Stumpf, Rebecca, Torres, Pedro J., Twaddle, Alan, Ibekwe, MaryAnn Ugochi, Villagra, Nicolás, Wandro, Stephen, White, Bryan, Whiteley, Andy, Whiteson, Katrine L., Wijmenga, Cisca, Zambrano, Maria M., Zschach, Henrike, Dutilh, Bas E.
প্রকাশিত Nat Microbiol (2019)