Antibody-supervised deep learning for quantification of tumor-infiltrating immune cells in hematoxylin and eosin stained breast cancer samples

por Turkki, Riku, Linder, Nina, Kovanen, Panu E., Pellinen, Teijo, Lundin, Johan
Publicado en J Pathol Inform (2016)

An open-source, MATLAB based annotation tool for virtual slides

por Turkki, Riku, Walliander, Margarita, Ojansivu, Ville, Linder, Nina, Lundin, Mikael, Lundin, Johan
Publicado 2013

Assessment of tumour viability in human lung cancer xenografts with texture-based image analysis

por Turkki, Riku, Linder, Nina, Holopainen, Tanja, Wang, Yinhai, Grote, Anne, Lundin, Mikael, Alitalo, Kari, Lundin, Johan
Publicado en J Clin Pathol (2015)

Automated segmentation of blood cells in Giemsa stained digitized thin blood films

por Walliander, Margarita, Turkki, Riku, Linder, Nina, Lundin, Mikael, Konsti, Juho, Ojansivu, Ville, Meri, Taru, Holmberg, Ville, Lundin, Johan
Publicado 2013

A Malaria Diagnostic Tool Based on Computer Vision Screening and Visualization of Plasmodium falciparum Candidate Areas in Digitized Blood Smears

por Linder, Nina, Turkki, Riku, Walliander, Margarita, Mårtensson, Andreas, Diwan, Vinod, Rahtu, Esa, Pietikäinen, Matti, Lundin, Mikael, Lundin, Johan
Publicado 2014

Identification of tumor epithelium and stroma in tissue microarrays using texture analysis

por Linder Nina, Konsti Juho, Turkki Riku, Rahtu Esa, Lundin Mikael, Nordling Stig, Haglund Caj, Ahonen Timo, Pietikäinen Matti, Lundin Johan
Publicado 2012-03-01

Identification of tumor epithelium and stroma in tissue microarrays using texture analysis

por Linder, Nina, Konsti, Juho, Turkki, Riku, Rahtu, Esa, Lundin, Mikael, Nordling, Stig, Haglund, Caj, Ahonen, Timo, Pietikäinen, Matti, Lundin, Johan
Publicado 2012

Quantification of Estrogen Receptor-Alpha Expression in Human Breast Carcinomas With a Miniaturized, Low-Cost Digital Microscope: A Comparison with a High-End Whole Slide-Scanner

por Holmström, Oscar, Linder, Nina, Lundin, Mikael, Moilanen, Hannu, Suutala, Antti, Turkki, Riku, Joensuu, Heikki, Isola, Jorma, Diwan, Vinod, Lundin, Johan
Publicado en PLoS One (2015)

Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis

por Blom, Sami, Paavolainen, Lassi, Bychkov, Dmitrii, Turkki, Riku, Mäki-Teeri, Petra, Hemmes, Annabrita, Välimäki, Katja, Lundin, Johan, Kallioniemi, Olli, Pellinen, Teijo
Publicado en Sci Rep (2017)

Deep learning based tissue analysis predicts outcome in colorectal cancer

por Bychkov, Dmitrii, Linder, Nina, Turkki, Riku, Nordling, Stig, Kovanen, Panu E., Verrill, Clare, Walliander, Margarita, Lundin, Mikael, Haglund, Caj, Lundin, Johan
Publicado en Sci Rep (2018)

Immune cell constitution in bone marrow microenvironment predicts outcome in adult ALL

por Hohtari, Helena, Brück, Oscar, Blom, Sami, Turkki, Riku, Sinisalo, Marjatta, Kovanen, Panu E., Kallioniemi, Olli, Pellinen, Teijo, Porkka, Kimmo, Mustjoki, Satu
Publicado en Leukemia (2019)

Combined epithelial marker analysis of tumour budding in stage II colorectal cancer

por Slik, Khadija, Blom, Sami, Turkki, Riku, Välimäki, Katja, Kurki, Samu, Mustonen, Harri, Haglund, Caj, Carpén, Olli, Kallioniemi, Olli, Korkeila, Eija, Sundström, Jari, Pellinen, Teijo
Publicado en J Pathol Clin Res (2018)

Breast cancer outcome prediction with tumour tissue images and machine learning

por Turkki, Riku, Byckhov, Dmitrii, Lundin, Mikael, Isola, Jorma, Nordling, Stig, Kovanen, Panu E., Verrill, Clare, von Smitten, Karl, Joensuu, Heikki, Lundin, Johan, Linder, Nina
Publicado en Breast Cancer Res Treat (2019)

Immunological data from cancer patients treated with Ad5/3-E2F-Δ24-GMCSF suggests utility for tumor immunotherapy

por Hemminki, Otto, Parviainen, Suvi, Juhila, Juuso, Turkki, Riku, Linder, Nina, Lundin, Johan, Kankainen, Matti, Ristimäki, Ari, Koski, Anniina, Liikanen, Ilkka, Oksanen, Minna, Nettelbeck, Dirk M., Kairemo, Kalevi, Partanen, Kaarina, Joensuu, Timo, Kanerva, Anna, Hemminki, Akseli
Publicado en Oncotarget (2015)

Immune profiles in acute myeloid leukemia bone marrow associate with patient age, T-cell receptor clonality, and survival

por Brück, Oscar, Dufva, Olli, Hohtari, Helena, Blom, Sami, Turkki, Riku, Ilander, Mette, Kovanen, Panu, Pallaud, Celine, Ramos, Pedro Marques, Lähteenmäki, Hanna, Välimäki, Katja, El Missiry, Mohamed, Ribeiro, Antonio, Kallioniemi, Olli, Porkka, Kimmo, Pellinen, Teijo, Mustjoki, Satu
Publicado en Blood Adv (2020)

Chronic Activation of Innate Immunity Correlates With Poor Prognosis in Cancer Patients Treated With Oncolytic Adenovirus

por Taipale, Kristian, Liikanen, Ilkka, Juhila, Juuso, Turkki, Riku, Tähtinen, Siri, Kankainen, Matti, Vassilev, Lotta, Ristimäki, Ari, Koski, Anniina, Kanerva, Anna, Diaconu, Iulia, Cerullo, Vincenzo, Vähä-Koskela, Markus, Oksanen, Minna, Linder, Nina, Joensuu, Timo, Lundin, Johan, Hemminki, Akseli
Publicado en Mol Ther (2016)

Local immunotherapy with ONCOS-102 shapes harmful tumor associated CD68+ macrophages to become beneficial cells that correlate with increased overall survival

por Pesonen, Sari, Lundin, Johan, Linder, Nina, Turkki, Riku, Ristimäki, Ari, Joensuu, Timo, Kairemo, Kalevi, Partanen, Kaarina, Alanko, Tuomo, Jäger, Elke, Karbach, Julia, Wahle, Claudia, Hemminki, Akseli, Backman, Charlotta, von Euler, Mikael, Hakonen, Tiina, Ranki, Tuuli, Vuolanto, Antti, Jäderberg, Magnus, Zamarin, Dmitry
Publicado en J Immunother Cancer (2015)

ITGB1-dependent upregulation of Caveolin-1 switches TGFβ signalling from tumour-suppressive to oncogenic in prostate cancer

por Pellinen, Teijo, Blom, Sami, Sánchez, Sara, Välimäki, Katja, Mpindi, John-Patrick, Azegrouz, Hind, Strippoli, Raffaele, Nieto, Raquel, Vitón, Mariano, Palacios, Irene, Turkki, Riku, Wang, Yinhai, Sánchez-Alvarez, Miguel, Nordling, Stig, Bützow, Anna, Mirtti, Tuomas, Rannikko, Antti, Montoya, María C., Kallioniemi, Olli, del Pozo, Miguel A.
Publicado en Sci Rep (2018)

Spatial aspects of oncogenic signalling determine the response to combination therapy in slice explants from Kras‐driven lung tumours

por Närhi, Katja, Nagaraj, Ashwini S, Parri, Elina, Turkki, Riku, van Duijn, Petra W, Hemmes, Annabrita, Lahtela, Jenni, Uotinen, Virva, Mäyränpää, Mikko I, Salmenkivi, Kaisa, Räsänen, Jari, Linder, Nina, Trapman, Jan, Rannikko, Antti, Kallioniemi, Olli, Af Hällström, Taija M, Lundin, Johan, Sommergruber, Wolfgang, Anders, Simon, Verschuren, Emmy W
Publicado en J Pathol (2018)

Local treatment of a pleural mesothelioma tumor with ONCOS-102 induces a systemic antitumor CD8(+) T-cell response, prominent infiltration of CD8(+) lymphocytes and Th1 type polari...

por Ranki, Tuuli, Joensuu, Timo, Jäger, Elke, Karbach, Julia, Wahle, Claudia, Kairemo, Kalevi, Alanko, Tuomo, Partanen, Kaarina, Turkki, Riku, Linder, Nina, Lundin, Johan, Ristimäki, Ari, Kankainen, Matti, Hemminki, Akseli, Backman, Charlotta, Dienel, Kasper, von Euler, Mikael, Haavisto, Elina, Hakonen, Tiina, Juhila, Juuso, Jaderberg, Magnus, Priha, Petri, Vassilev, Lotta, Vuolanto, Antti, Pesonen, Sari
Publicado en Oncoimmunology (2014)