Conservation, Compensation, and Evolution of N-Linked Glycans in the HIV-1 Group M Subtypes and Circulating Recombinant Forms

Por Travers, Simon A.
Publicado em 2012

RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA

Por Wright, Imogen A., Travers, Simon A.
Publicado em 2014

A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses

Por Fares, Mario A., Travers, Simon A. A.
Publicado em 2006

Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses

Por Crous, Saleema, Shrestha, Ram Krishna, Travers, Simon A
Publicado em 2012

Evidence for Heterogeneous Selective Pressures in the Evolution of the env Gene in Different Human Immunodeficiency Virus Type 1 Subtypes

Por Travers, Simon A. A., O'Connell, Mary J., McCormack, Grace P., McInerney, James O.
Publicado em 2005

The Influence of N-Linked Glycans on the Molecular Dynamics of the HIV-1 gp120 V3 Loop

Por Wood, Natasha T., Fadda, Elisa, Davis, Robert, Grant, Oliver C., Martin, Joanne C., Woods, Robert J., Travers, Simon A.
Publicado em 2013

QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform

Por Shrestha, Ram Krishna, Lubinsky, Baruch, Bansode, Vijay B, Moinz, Mónica BJ, McCormack, Grace P, Travers, Simon A
Publicado em 2014

Coreceptor Usage, Diversity, and Divergence in Drug-Naive and Drug-Exposed Individuals from Malawi, Infected with HIV-1 Subtype C for More Than 20 Years

Por Seager, Ishla, Travers, Simon A., Leeson, Michael D., Crampin, Amelia C., French, Neil, Glynn, Judith R., McCormack, Grace P.
Publicado em 2014

Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing

Por Bansode Vijay, McCormack Grace P, Crampin Amelia C, Ngwira Bagrey, Shrestha Ram K, French Neil, Glynn Judith R, Travers Simon A
Publicado em 2013-01-01

Deep Sequencing Reveals Minor Protease Resistance Mutations in Patients Failing a Protease Inhibitor Regimen

Por Fisher, Randall, van Zyl, Gert U., Travers, Simon A. A., Kosakovsky Pond, Sergei L., Engelbrech, Susan, Murrell, Ben, Scheffler, Konrad, Smith, Davey
Publicado em 2012

Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing

Por Bansode, Vijay, McCormack, Grace P, Crampin, Amelia C, Ngwira, Bagrey, Shrestha, Ram K, French, Neil, Glynn, Judith R, Travers, Simon A
Publicado em 2013

HIV Type 1 Mutational Patterns in HIV Type 1 Subtype C-Infected Long-Term Survivors in Karonga District Malawi: Further Analysis and Correction

Por Seager, Ishla, Leeson, Michael D., Crampin, Amelia C., Mulawa, Dominic, French, Neil, Glynn, Judith R., Travers, Simon A.A., McCormack, Grace P.
Publicado em 2012

Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor

Por Jiang, Xiaowei, Feyertag, Felix, Meehan, Conor J., McCormack, Grace P., Travers, Simon A., Craig, Charles, Westby, Mike, Lewis, Marilyn, Robertson, David L.
Publicado no J Virol (2015)

Drug Resistance Mutations in Drug-Naive HIV Type 1 Subtype C-Infected Individuals from Rural Malawi

Por Bansode, Vijay, Drebert, Zuzanna J., Travers, Simon A.A., Banda, Emmanuel, Molesworth, Anna, Crampin, Amelia, Ngwira, Bagrey, French, Neil, Glynn, Judith R., McCormack, Grace P.
Publicado em 2011

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

Por Redmond, Niamh E., Raleigh, Jean, van Soest, Rob W. M., Kelly, Michelle, Travers, Simon A. A., Bradshaw, Brian, Vartia, Salla, Stephens, Kelly M., McCormack, Grace P.
Publicado em 2011

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

Por Creevey, Christopher J., Fitzpatrick, David A., Philip, Gayle K., Kinsella, Rhoda J., O'Connell, Mary J., Pentony, Melissa M., Travers, Simon A., Wilkinson, Mark, McInerney, James O.
Publicado em 2004

Timing and Reconstruction of the Most Recent Common Ancestor of the Subtype C Clade of Human Immunodeficiency Virus Type 1

Por Travers, Simon A. A., Clewley, Jonathan P., Glynn, Judith R., Fine, Paul E. M., Crampin, Amelia C., Sibande, Felix, Mulawa, Dominic, McInerney, James O., McCormack, Grace P.
Publicado em 2004

HIV Infection in High School Students in Rural South Africa: Role of Transmissions Among Students

Por Kharsany, Ayesha B.M., Buthelezi, Thulasizwe John, Frohlich, Janet A., Yende-Zuma, Nonhlanhla, Samsunder, Natasha, Mahlase, Gethwana, Williamson, Carolyn, Travers, Simon A., Marais, Jinny C., Dellar, Rachael, Karim, Salim S. Abdool, Karim, Quarraisha Abdool
Publicado em 2014

Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline immunoglobulin gene repertoire()

Por Scheepers, Cathrine, Shrestha, Ram K., Lambson, Bronwen E., Jackson, Katherine J. L., Wright, Imogen A., Naicker, Dshanta, Goosen, Mark, Berrie, Leigh, Ismail, Arshad, Garrett, Nigel, Karim, Quarraisha Abdool, Karim, Salim S. Abdool, Moore, Penny L., Travers, Simon A., Morris, Lynn
Publicado no J Immunol (2015)