Systematic analysis of non-structural protein features for the prediction of PTM function potential by artificial neural networks

by Dewhurst, Henry M., Torres, Matthew P.
Published in PLoS One (2017)

Proteome-wide Structural Analysis of PTM Hotspots Reveals Regulatory Elements Predicted to Impact Biological Function and Disease

by Torres, Matthew P., Dewhurst, Henry, Sundararaman, Niveda
Published in Mol Cell Proteomics (2016)

Structural Analysis of PTM Hotspots (SAPH-ire) – A Quantitative Informatics Method Enabling the Discovery of Novel Regulatory Elements in Protein Families

by Dewhurst, Henry M., Choudhury, Shilpa, Torres, Matthew P.
Published in Mol Cell Proteomics (2015)

Negative Feedback Phosphorylation of Gγ Subunit Ste18 and the Ste5 Scaffold Synergistically Regulates MAPK Activation in Yeast

by Choudhury, Shilpa, Baradaran-Mashinchi, Parastoo, Torres, Matthew P.
Published in Cell Rep (2018)

Deciphering Post-translational Modification Codes

by Lothrop, Adam P., Torres, Matthew P., Fuchs, Stephen M.
Published 2013

Three Proteins of the U7-Specific Sm Ring Function as the Molecular Ruler To Determine the Site of 3′-End Processing in Mammalian Histone Pre-mRNA

by Yang, Xiao-cui, Torres, Matthew P., Marzluff, William F., Dominski, Zbigniew
Published 2009

Cell Cycle-dependent Phosphorylation and Ubiquitination of a G Protein α Subunit

by Torres, Matthew P., Clement, Sarah T., Cappell, Steven D., Dohlman, Henrik G.
Published 2011

Pheromone- and RSP5-dependent Ubiquitination of the G Protein β Subunit Ste4 in Yeast

by Zhu, Ming, Torres, Matthew P., Kelley, Joshua B., Dohlman, Henrik G., Wang, Yuqi
Published 2011

Guanine Nucleotide-binding Protein (Gα) Endocytosis by a Cascade of Ubiquitin Binding Domain Proteins Is Required for Sustained Morphogenesis and Proper Mating in Yeast

by Dixit, Gauri, Baker, Rachael, Sacks, Carly M., Torres, Matthew P., Dohlman, Henrik G.
Published 2014

Different Grp94 components interact transiently with the myocilin olfactomedin domain in vitro to enhance or retard its amyloid aggregation

by Huard, Dustin J. E., Jonke, Alex P., Torres, Matthew P., Lieberman, Raquel L.
Published in Sci Rep (2019)

Genetic Analysis of Rare Human Variants of Regulators of G Protein Signaling Proteins and Their Role in Human Physiology and Disease

by Squires, Katherine E., Montañez-Miranda, Carolina, Pandya, Rushika R., Torres, Matthew P., Hepler, John R.
Published in Pharmacol Rev (2018)

Predicted Functional Implications of Phosphorylation of Regulator of G Protein Signaling Protein in Plants

by Tunc-Ozdemir, Meral, Li, Bo, Jaiswal, Dinesh K., Urano, Daisuke, Jones, Alan M., Torres, Matthew P.
Published in Front Plant Sci (2017)

G Protein Mono-ubiquitination by the Rsp5 Ubiquitin Ligase

by Torres, Matthew P., Lee, Michael J., Ding, Feng, Purbeck, Carrie, Kuhlman, Brian, Dokholyan, Nikolay V., Dohlman, Henrik G.
Published 2009

Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem–loop-binding proteins that contributes to high-affinity RNA binding

by Borchers, Christoph H., Thapar, Roopa, Petrotchenko, Evgeniy V., Torres, Matthew P., Speir, J. Paul, Easterling, Michael, Dominski, Zbigniew, Marzluff, William F.
Published 2006

DRILL: An Electrospray Ionization-Mass Spectrometry Interface for Improved Sensitivity via Inertial Droplet Sorting and Electrohydrodynamic Focusing in a Swirling Flow

by Kottke, Peter A., Lee, Jung Y., Jonke, Alex P., Seneviratne, Chinthaka A., Hecht, Elizabeth S., Muddiman, David C., Torres, Matthew P., Fedorov, Andrei G.
Published in Anal Chem (2017)

Tyrosine phosphorylation switching of a G protein

by Li, Bo, Tunc-Ozdemir, Meral, Urano, Daisuke, Jia, Haiyan, Werth, Emily G., Mowrey, David D., Hicks, Leslie M., Dokholyan, Nikolay V., Torres, Matthew P., Jones, Alan M.
Published in J Biol Chem (2018)

Both positional and chemical variables control in vitro proteolytic cleavage of a presenilin ortholog

by Naing, Swe-Htet, Kalyoncu, Sibel, Smalley, David M., Kim, Hyojung, Tao, Xingjian, George, Josh B., Jonke, Alex P., Oliver, Ryan C., Urban, Volker S., Torres, Matthew P., Lieberman, Raquel L.
Published in J Biol Chem (2018)

Acylation of Superoxide Dismutase 1 (SOD1) at K122 Governs SOD1-Mediated Inhibition of Mitochondrial Respiration

by Banks, Courtney J., Rodriguez, Nathan W., Gashler, Kyle R., Pandya, Rushika R., Mortenson, Jeffrey B., Whited, Matthew D., Soderblom, Erik J., Thompson, J. Will, Moseley, M. Arthur, Reddi, Amit R., Tessem, Jeffery S., Torres, Matthew P., Bikman, Benjamin T., Andersen, Joshua L.
Published in Mol Cell Biol (2017)

Genetic heterogeneity within collective invasion packs drives leader and follower cell phenotypes

by Zoeller, Elizabeth L., Pedro, Brian, Konen, Jessica, Dwivedi, Bhakti, Rupji, Manali, Sundararaman, Niveda, Wang, Lei, Horton, John R., Zhong, Chaojie, Barwick, Benjamin G., Cheng, Xiaodong, Martinez, Elisabeth D., Torres, Matthew P., Kowalski, Jeanne, Marcus, Adam I., Vertino, Paula M.
Published in J Cell Sci (2019)