Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

nork Timme, Ruth E, Delwiche, Charles F
Argitaratua 2010

Phylogeny of Salmonella enterica subspecies arizonae by whole-genome sequencing reveals high incidence of polyphyly and low phase 1 H antigen variability

nork Shariat, Nikki W., Timme, Ruth E., Walters, Abigail T.
Argitaratua izan da Microb Genom (2021)

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants

nork Timme, Ruth E., Bachvaroff, Tsvetan R., Delwiche, Charles F.
Argitaratua 2012

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

nork Worley, Jay, Meng, Jianghong, Allard, Marc W., Brown, Eric W., Timme, Ruth E.
Argitaratua izan da mBio (2018)

Draft Genome Sequences of Histamine-Producing Photobacterium kishitanii and Photobacterium angustum, Isolated from Albacore (Thunnus alalunga) and Yellowfin (Thunnus albacares) Tun...

nork Bjornsdottir-Butler, Kristin, McCarthy, Susan A., Dunlap, Paul V., Timme, Ruth E., Benner, Ronald A.
Argitaratua izan da Genome Announc (2015)

TreeToReads - a pipeline for simulating raw reads from phylogenies

nork McTavish, Emily Jane, Pettengill, James, Davis, Steven, Rand, Hugh, Strain, Errol, Allard, Marc, Timme, Ruth E.
Argitaratua izan da BMC Bioinformatics (2017)

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

nork Timme, Ruth E., Wolfgang, William J., Balkey, Maria, Venkata, Sai Laxmi Gubbala, Randolph, Robyn, Allard, Marc, Strain, Errol
Argitaratua izan da One Health Outlook (2020)

GenomeTrakr proficiency testing for foodborne pathogen surveillance: an exercise from 2015

nork Timme, Ruth E., Rand, Hugh, Sanchez Leon, Maria, Hoffmann, Maria, Strain, Errol, Allard, Marc, Roberson, Dwayne, Baugher, Joseph D.
Argitaratua izan da Microb Genom (2018)

Draft Genome Sequences of 40 Salmonella enterica Serovar Typhimurium Strains Isolated from Humans and Food in Brazil

nork Almeida, Fernanda, Medeiros, Marta Inês Cazentini, Rodrigues, Dália Prazeres, Payne, Justin, Timme, Ruth E., Allard, Marc W., Falcão, Juliana Pfrimer
Argitaratua izan da Genome Announc (2016)

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

nork Pettengill, James B., Timme, Ruth E., Barrangou, Rodolphe, Toro, Magaly, Allard, Marc W., Strain, Errol, Musser, Steven M., Brown, Eric W.
Argitaratua 2014

An analysis of Echinacea chloroplast genomes: Implications for future botanical identification

nork Zhang, Ning, Erickson, David L., Ramachandran, Padmini, Ottesen, Andrea R., Timme, Ruth E., Funk, Vicki A., Luo, Yan, Handy, Sara M.
Argitaratua izan da Sci Rep (2017)

Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance

nork Timme, Ruth E., Strain, Errol, Baugher, Joseph D., Davis, Steven, Gonzalez-Escalona, Narjol, Sanchez Leon, Maria, Allard, Marc W., Brown, Eric W., Tallent, Sandra, Rand, Hugh
Argitaratua izan da J Clin Microbiol (2019)

Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters

nork Timme, Ruth E., Pettengill, James B., Allard, Marc W., Strain, Errol, Barrangou, Rodolphe, Wehnes, Chris, Van Kessel, JoAnn S., Karns, Jeffrey S., Musser, Steven M., Brown, Eric W.
Argitaratua 2013

Unraveling the Evolution of Auxin Signaling(1)([C])([W])

nork De Smet, Ive, Voß, Ute, Lau, Steffen, Wilson, Michael, Shao, Ning, Timme, Ruth E., Swarup, Ranjan, Kerr, Ian, Hodgman, Charlie, Bock, Ralph, Bennett, Malcolm, Jürgens, Gerd, Beeckman, Tom
Argitaratua 2011

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

nork Timme, Ruth E., Rand, Hugh, Shumway, Martin, Trees, Eija K., Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E., Defibaugh-Chavez, Stephanie, Carleton, Heather A., Klimke, William A., Katz, Lee S.
Argitaratua izan da PeerJ (2017)

Draft Genome Sequences of 21 Salmonella enterica Serovar Enteritidis Strains

nork Timme, Ruth E., Allard, Marc W., Luo, Yan, Strain, Errol, Pettengill, James, Wang, Charles, Li, Cong, Keys, Christine E., Zheng, Jie, Stones, Robert, Wilson, Mark R., Musser, Steven M., Brown, Eric W.
Argitaratua 2012

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

nork Timme, Ruth E., Lafon, Patricia C., Balkey, Maria, Adams, Jennifer K., Wagner, Darlene, Carleton, Heather, Strain, Errol, Hoffmann, Maria, Sabol, Ashley, Rand, Hugh, Lindsey, Rebecca, Sheehan, Deborah, Baugher, Joseph D., Trees, Eija
Argitaratua izan da Sci Data (2020)

Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates

nork Lomonaco, Sara, Crawford, Matthew A., Lascols, Christine, Timme, Ruth E., Anderson, Kevin, Hodge, David R., Fisher, Debra J., Pillai, Segaran P., Morse, Stephen A., Khan, Erum, Hughes, Molly A., Allard, Marc W., Sharma, Shashi K.
Argitaratua izan da PLoS One (2018)

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

nork Pirone-Davies, Cary, Hoffmann, Maria, Roberts, Richard J., Muruvanda, Tim, Timme, Ruth E., Strain, Errol, Luo, Yan, Payne, Justin, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Clark, Tyson A., Korlach, Jonas, Evans, Peter S., Allard, Marc W.
Argitaratua izan da PLoS One (2015)

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

nork Vangay, Pajau, Burgin, Josephine, Johnston, Anjanette, Beck, Kristen L., Berrios, Daniel C., Blumberg, Kai, Canon, Shane, Chain, Patrick, Chandonia, John-Marc, Christianson, Danielle, Costes, Sylvain V., Damerow, Joan, Duncan, William D., Dundore-Arias, Jose Pablo, Fagnan, Kjiersten, Galazka, Jonathan M., Gibbons, Sean M., Hays, David, Hervey, Judson, Hu, Bin, Hurwitz, Bonnie L., Jaiswal, Pankaj, Joachimiak, Marcin P., Kinkel, Linda, Ladau, Joshua, Martin, Stanton L., McCue, Lee Ann, Miller, Kayd, Mouncey, Nigel, Mungall, Chris, Pafilis, Evangelos, Reddy, T. B. K., Richardson, Lorna, Roux, Simon, Schriml, Lynn M., Shaffer, Justin P., Sundaramurthi, Jagadish Chandrabose, Thompson, Luke R., Timme, Ruth E., Zheng, Jie, Wood-Charlson, Elisha M., Eloe-Fadrosh, Emiley A.
Argitaratua izan da mSystems (2021)