Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

BACKGROUND: As next generation sequence technology has advanced, there have been parallel advances in genome-scale analysis programs for determining evolutionary relationships as proxies for epidemiological relationship in public health. Most new programs skip traditional steps of ortholog determina...

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Bibliographic Details
Published in:PeerJ
Main Authors: Timme, Ruth E., Rand, Hugh, Shumway, Martin, Trees, Eija K., Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E., Defibaugh-Chavez, Stephanie, Carleton, Heather A., Klimke, William A., Katz, Lee S.
Format: Artigo
Language:Inglês
Published: PeerJ Inc. 2017
Subjects:
Bioinformatics
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC5782805/
https://ncbi.nlm.nih.gov/pubmed/29372115
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.7717/peerj.3893
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