Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data

Por Seo, Tae-Kun, Kishino, Hirohisa, Thorne, Jeffrey L.
Publicado em 2005

History Can Matter: Non-Markovian Behavior of Ancestral Lineages

Por Cartwright, Reed A., Lartillot, Nicolas, Thorne, Jeffrey L.
Publicado em 2011

Relaxing the Molecular Clock to Different Degrees for Different Substitution Types

Por Lee, Hui-Jie, Rodrigue, Nicolas, Thorne, Jeffrey L.
Publicado no Mol Biol Evol (2015)

Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences

Por Choi, Sang Chul, Redelings, Benjamin D, Thorne, Jeffrey L
Publicado em 2008

Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution

Por Yokoyama, Ken Daigoro, Thorne, Jeffrey L., Wray, Gregory A.
Publicado em 2010

Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach.

Por Seo, Tae-Kun, Thorne, Jeffrey L, Hasegawa, Masami, Kishino, Hirohisa
Publicado em 2002

Grouping substitution types into different relaxed molecular clocks

Por Lee, Hui-Jie, Kishino, Hirohisa, Rodrigue, Nicolas, Thorne, Jeffrey L.
Publicado no Philos Trans R Soc Lond B Biol Sci (2016)

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci

Por Choi, Sang Chul, Stone, Eric A., Kishino, Hirohisa, Thorne, Jeffrey L.
Publicado em 2008

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach

Por Scholl, Elizabeth H, Thorne, Jeffrey L, McCarter, James P, Bird, David Mck
Publicado em 2003

Adaptive Threonine Increase in Transmembrane Regions of Mitochondrial Proteins in Higher Primates

Por Kitazoe, Yasuhiro, Kishino, Hirohisa, Hasegawa, Masami, Nakajima, Noriaki, Thorne, Jeffrey L., Tanaka, Masashi
Publicado em 2008

Roles of Solvent Accessibility and Gene Expression in Modeling Protein Sequence Evolution

Por Wang, Kuangyu, Yu, Shuhui, Ji, Xiang, Lakner, Clemens, Griffing, Alexander, Thorne, Jeffrey L
Publicado no Evol Bioinform Online (2015)

Dynamic Reciprocity Between Cells and Their Microenvironment in Reproduction

Por Thorne, Jeffrey T., Segal, Thalia R., Chang, Sydney, Jorge, Soledad, Segars, James H., Leppert, Phyllis C.
Publicado no Biol Reprod (2014)

Gene Expression Profiles of Beta-Cell Enriched Tissue Obtained by Laser Capture Microdissection from Subjects with Type 2 Diabetes

Por Marselli, Lorella, Thorne, Jeffrey, Dahiya, Sonika, Sgroi, Dennis C., Sharma, Arun, Bonner-Weir, Susan, Marchetti, Piero, Weir, Gordon C.
Publicado em 2010

Gene Expression of Purified β-Cell Tissue Obtained from Human Pancreas with Laser Capture Microdissection

Por Marselli, Lorella, Thorne, Jeffrey, Ahn, Yu-Bae, Omer, Abdulkadir, Sgroi, Dennis C., Libermann, Towia, Otu, Hasan H., Sharma, Arun, Bonner-Weir, Susan, Weir, Gordon C.
Publicado em 2008

Increased Interleukin (IL)-1β Messenger Ribonucleic Acid Expression in β-Cells of Individuals with Type 2 Diabetes and Regulation of IL-1β in Human Islets by Glucose and Autostimul...

Por Böni-Schnetzler, Marianne, Thorne, Jeffrey, Parnaud, Géraldine, Marselli, Lorella, Ehses, Jan A., Kerr-Conte, Julie, Pattou, Francois, Halban, Philippe A., Weir, Gordon C., Donath, Marc Y.
Publicado em 2008

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora Ic clade species

Por Lassiter, Erica S., Russ, Carsten, Nusbaum, Chad, Zeng, Qiandong, Saville, Amanda, Olarte, Rodrigo, Carbone, Ignazio, Hu, Chia-Hui, Seguin-Orlando, Andaine, Samaniego, Jose A, Thorne, Jeffrey L., Ristaino, Jean B.
Publicado no Curr Genet (2015)

Clinical predictors of frequent patient telephone calls in Parkinson’s disease

Por Liu, Anli A., Boxhorn, Christine E., Klufas, Michael A., Christos, Paul J., Thorne, Jeffrey T., Shih, Angela Y., Tsankova, Nadejda M., Dorfman, Benjamin J., Henchcliffe, Claire, Piboolnurak, Panida, Nirenberg, Melissa J.
Publicado em 2010

The interface of protein structure, protein biophysics, and molecular evolution

Por Liberles, David A, Teichmann, Sarah A, Bahar, Ivet, Bastolla, Ugo, Bloom, Jesse, Bornberg-Bauer, Erich, Colwell, Lucy J, de Koning, A P Jason, Dokholyan, Nikolay V, Echave, Julian, Elofsson, Arne, Gerloff, Dietlind L, Goldstein, Richard A, Grahnen, Johan A, Holder, Mark T, Lakner, Clemens, Lartillot, Nicholas, Lovell, Simon C, Naylor, Gavin, Perica, Tina, Pollock, David D, Pupko, Tal, Regan, Lynne, Roger, Andrew, Rubinstein, Nimrod, Shakhnovich, Eugene, Sjölander, Kimmen, Sunyaev, Shamil, Teufel, Ashley I, Thorne, Jeffrey L, Thornton, Joseph W, Weinreich, Daniel M, Whelan, Simon
Publicado em 2012