An adaptable method using human mixed tissue ratiometric controls for benchmarking performance on gene expression microarrays in clinical laboratories

по Pine, P Scott, Rosenzweig, Barry A, Thompson, Karol L
Опубликовано 2011

Development of methods for data quantitation of spiked salmon host cell DNA in protamine sulfate by qPCR

по Sommers, Cynthia, Rosenzweig, Barry, Oum, Lida, Thompson, Karol, Keire, David A.
Опубликовано в: Data Brief (2018)

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA

по Thompson, Karol L, Pine, P Scott, Rosenzweig, Barry A, Turpaz, Yaron, Retief, Jacques
Опубликовано 2007

Workgroup Report: Review of Genomics Data Based on Experience with Mock Submissions—View of the CDER Pharmacology Toxicology Nonclinical Pharmacogenomics Subcommittee

по Leighton, John K., Brown, Paul, Ellis, Amy, Harlow, Patricia, Harrouk, Wafa, Pine, P. Scott, Robison, Timothy, Rosario, Lilliam, Thompson, Karol
Опубликовано 2006

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions

по Han, Tao, Melvin, Cathy D, Shi, Leming, Branham, William S, Moland, Carrie L, Pine, P Scott, Thompson, Karol L, Fuscoe, James C
Опубликовано 2006

Comparison of Kidney Injury Molecule-1 and Other Nephrotoxicity Biomarkers in Urine and Kidney Following Acute Exposure to Gentamicin, Mercury, and Chromium

по Zhou, Yuzhao, Vaidya, Vishal S., Brown, Ronald P., Zhang, Jun, Rosenzweig, Barry A., Thompson, Karol L., Miller, Terry J., Bonventre, Joseph V., Goering, Peter L.
Опубликовано 2007

The Utility of a Rodent Model in Detecting Pediatric Drug-Induced Nephrotoxicity

по Espandiari, Parvaneh, Zhang, Jun, Rosenzweig, Barry A., Vaidya, Vishal S., Sun, Jinchun, Schnackenberg, Laura, Herman, Eugene H., Knapton, Alan, Bonventre, Joseph V., Beger, Richard D., Thompson, Karol L., Hanig, Joseph
Опубликовано 2007

Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR

по Wolfinger, Russell D., Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O’Lone, Raegan, Pine, P. Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S., Thompson, Karol L.
Опубликовано в: BMC Biotechnol (2018)

Identification of platform-independent gene expression markers of cisplatin nephrotoxicity.

по Thompson, Karol L, Afshari, Cynthia A, Amin, Rupesh P, Bertram, Timothy A, Car, Bruce, Cunningham, Michael, Kind, Clive, Kramer, Jeffrey A, Lawton, Michael, Mirsky, Michael, Naciff, Jorge M, Oreffo, Victor, Pine, P Scott, Sistare, Frank D
Опубликовано 2004

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

по Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Liu, Jie, Qian, Hui-Rong, Quackenbush, John, Pettit, Syril, Thompson, Karol L
Опубликовано 2008

Non-Lethal Endotoxin Injection: A Rat Model of Hypercoagulability

по Brooks, Marjory B., Turk, James R., Guerrero, Abraham, Narayanan, Padma K., Nolan, John P., Besteman, Elizabeth G., Wilson, Dennis W., Thomas, Roberta A., Fishman, Cindy E., Thompson, Karol L., Ellinger-Ziegelbauer, Heidrun, Pierson, Jennifer B., Paulman, April, Chiang, Alan Y., Schultze, Albert E.
Опубликовано в: PLoS One (2017)

Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment.

по Kramer, Jeffrey A, Pettit, Syril D, Amin, Rupesh P, Bertram, Timothy A, Car, Bruce, Cunningham, Michael, Curtiss, Sandra W, Davis, John W, Kind, Clive, Lawton, Michael, Naciff, Jorge M, Oreffo, Victor, Roman, Richard J, Sistare, Frank D, Stevens, James, Thompson, Karol, Vickers, Alison E, Wild, Stacey, Afshari, Cynthia A
Опубликовано 2004

Identification of putative gene based markers of renal toxicity.

по Amin, Rupesh P, Vickers, Alison E, Sistare, Frank, Thompson, Karol L, Roman, Richard J, Lawton, Michael, Kramer, Jeffrey, Hamadeh, Hisham K, Collins, Jennifer, Grissom, Sherry, Bennett, Lee, Tucker, C Jeffrey, Wild, Stacie, Kind, Clive, Oreffo, Victor, Davis, John W, Curtiss, Sandra, Naciff, Jorge M, Cunningham, Michael, Tennant, Raymond, Stevens, James, Car, Bruce, Bertram, Timothy A, Afshari, Cynthia A
Опубликовано 2004

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats

по Thompson, Karol L., Rosenzweig, Barry A., Pine, P. Scott, Retief, Jacques, Turpaz, Yaron, Afshari, Cynthia A., Hamadeh, Hisham K., Damore, Michael A., Boedigheimer, Michael, Blomme, Eric, Ciurlionis, Rita, Waring, Jeffrey F., Fuscoe, James C., Paules, Richard, Tucker, Charles J., Fare, Thomas, Coffey, Ernest M., He, Yudong, Collins, Patrick J., Jarnagin, Kurt, Fujimoto, Susan, Ganter, Brigitte, Kiser, Gretchen, Kaysser-Kranich, Tamma, Sina, Joseph, Sistare, Frank D.
Опубликовано 2005

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics

по Pine, P. Scott, Lund, Steven P., Parsons, Jerod R., Vang, Lindsay K., Mahabal, Ashish A., Cinquini, Luca, Kelly, Sean C., Kincaid, Heather, Crichton, Daniel J., Spira, Avrum, Liu, Gang, Gower, Adam C., Pass, Harvey I., Goparaju, Chandra, Dubinett, Steven M., Krysan, Kostyantyn, Stass, Sanford A., Kukuruga, Debra, Van Keuren-Jensen, Kendall, Courtright-Lim, Amanda, Thompson, Karol L., Rosenzweig, Barry A., Sorbara, Lynn, Srivastava, Sudhir, Salit, Marc L.
Опубликовано в: BMC Genomics (2018)