An adaptable method using human mixed tissue ratiometric controls for benchmarking performance on gene expression microarrays in clinical laboratories

Por Pine, P Scott, Rosenzweig, Barry A, Thompson, Karol L
Publicado em 2011

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA

Por Thompson, Karol L, Pine, P Scott, Rosenzweig, Barry A, Turpaz, Yaron, Retief, Jacques
Publicado em 2007

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions

Por Han, Tao, Melvin, Cathy D, Shi, Leming, Branham, William S, Moland, Carrie L, Pine, P Scott, Thompson, Karol L, Fuscoe, James C
Publicado em 2006

Comparison of Kidney Injury Molecule-1 and Other Nephrotoxicity Biomarkers in Urine and Kidney Following Acute Exposure to Gentamicin, Mercury, and Chromium

Por Zhou, Yuzhao, Vaidya, Vishal S., Brown, Ronald P., Zhang, Jun, Rosenzweig, Barry A., Thompson, Karol L., Miller, Terry J., Bonventre, Joseph V., Goering, Peter L.
Publicado em 2007

The Utility of a Rodent Model in Detecting Pediatric Drug-Induced Nephrotoxicity

Por Espandiari, Parvaneh, Zhang, Jun, Rosenzweig, Barry A., Vaidya, Vishal S., Sun, Jinchun, Schnackenberg, Laura, Herman, Eugene H., Knapton, Alan, Bonventre, Joseph V., Beger, Richard D., Thompson, Karol L., Hanig, Joseph
Publicado em 2007

Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR

Por Wolfinger, Russell D., Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O’Lone, Raegan, Pine, P. Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S., Thompson, Karol L.
Publicado no BMC Biotechnol (2018)

Identification of platform-independent gene expression markers of cisplatin nephrotoxicity.

Por Thompson, Karol L, Afshari, Cynthia A, Amin, Rupesh P, Bertram, Timothy A, Car, Bruce, Cunningham, Michael, Kind, Clive, Kramer, Jeffrey A, Lawton, Michael, Mirsky, Michael, Naciff, Jorge M, Oreffo, Victor, Pine, P Scott, Sistare, Frank D
Publicado em 2004

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

Por Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Liu, Jie, Qian, Hui-Rong, Quackenbush, John, Pettit, Syril, Thompson, Karol L
Publicado em 2008

Non-Lethal Endotoxin Injection: A Rat Model of Hypercoagulability

Por Brooks, Marjory B., Turk, James R., Guerrero, Abraham, Narayanan, Padma K., Nolan, John P., Besteman, Elizabeth G., Wilson, Dennis W., Thomas, Roberta A., Fishman, Cindy E., Thompson, Karol L., Ellinger-Ziegelbauer, Heidrun, Pierson, Jennifer B., Paulman, April, Chiang, Alan Y., Schultze, Albert E.
Publicado no PLoS One (2017)

Identification of putative gene based markers of renal toxicity.

Por Amin, Rupesh P, Vickers, Alison E, Sistare, Frank, Thompson, Karol L, Roman, Richard J, Lawton, Michael, Kramer, Jeffrey, Hamadeh, Hisham K, Collins, Jennifer, Grissom, Sherry, Bennett, Lee, Tucker, C Jeffrey, Wild, Stacie, Kind, Clive, Oreffo, Victor, Davis, John W, Curtiss, Sandra, Naciff, Jorge M, Cunningham, Michael, Tennant, Raymond, Stevens, James, Car, Bruce, Bertram, Timothy A, Afshari, Cynthia A
Publicado em 2004

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats

Por Thompson, Karol L., Rosenzweig, Barry A., Pine, P. Scott, Retief, Jacques, Turpaz, Yaron, Afshari, Cynthia A., Hamadeh, Hisham K., Damore, Michael A., Boedigheimer, Michael, Blomme, Eric, Ciurlionis, Rita, Waring, Jeffrey F., Fuscoe, James C., Paules, Richard, Tucker, Charles J., Fare, Thomas, Coffey, Ernest M., He, Yudong, Collins, Patrick J., Jarnagin, Kurt, Fujimoto, Susan, Ganter, Brigitte, Kiser, Gretchen, Kaysser-Kranich, Tamma, Sina, Joseph, Sistare, Frank D.
Publicado em 2005

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics

Por Pine, P. Scott, Lund, Steven P., Parsons, Jerod R., Vang, Lindsay K., Mahabal, Ashish A., Cinquini, Luca, Kelly, Sean C., Kincaid, Heather, Crichton, Daniel J., Spira, Avrum, Liu, Gang, Gower, Adam C., Pass, Harvey I., Goparaju, Chandra, Dubinett, Steven M., Krysan, Kostyantyn, Stass, Sanford A., Kukuruga, Debra, Van Keuren-Jensen, Kendall, Courtright-Lim, Amanda, Thompson, Karol L., Rosenzweig, Barry A., Sorbara, Lynn, Srivastava, Sudhir, Salit, Marc L.
Publicado no BMC Genomics (2018)