An adaptable method using human mixed tissue ratiometric controls for benchmarking performance on gene expression microarrays in clinical laboratories

gan Pine, P Scott, Rosenzweig, Barry A, Thompson, Karol L
Cyhoeddwyd 2011

Development of methods for data quantitation of spiked salmon host cell DNA in protamine sulfate by qPCR

gan Sommers, Cynthia, Rosenzweig, Barry, Oum, Lida, Thompson, Karol, Keire, David A.
Cyhoeddwyd yn Data Brief (2018)

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA

gan Thompson, Karol L, Pine, P Scott, Rosenzweig, Barry A, Turpaz, Yaron, Retief, Jacques
Cyhoeddwyd 2007

Workgroup Report: Review of Genomics Data Based on Experience with Mock Submissions—View of the CDER Pharmacology Toxicology Nonclinical Pharmacogenomics Subcommittee

gan Leighton, John K., Brown, Paul, Ellis, Amy, Harlow, Patricia, Harrouk, Wafa, Pine, P. Scott, Robison, Timothy, Rosario, Lilliam, Thompson, Karol
Cyhoeddwyd 2006

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions

gan Han, Tao, Melvin, Cathy D, Shi, Leming, Branham, William S, Moland, Carrie L, Pine, P Scott, Thompson, Karol L, Fuscoe, James C
Cyhoeddwyd 2006

Comparison of Kidney Injury Molecule-1 and Other Nephrotoxicity Biomarkers in Urine and Kidney Following Acute Exposure to Gentamicin, Mercury, and Chromium

gan Zhou, Yuzhao, Vaidya, Vishal S., Brown, Ronald P., Zhang, Jun, Rosenzweig, Barry A., Thompson, Karol L., Miller, Terry J., Bonventre, Joseph V., Goering, Peter L.
Cyhoeddwyd 2007

The Utility of a Rodent Model in Detecting Pediatric Drug-Induced Nephrotoxicity

gan Espandiari, Parvaneh, Zhang, Jun, Rosenzweig, Barry A., Vaidya, Vishal S., Sun, Jinchun, Schnackenberg, Laura, Herman, Eugene H., Knapton, Alan, Bonventre, Joseph V., Beger, Richard D., Thompson, Karol L., Hanig, Joseph
Cyhoeddwyd 2007

Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR

gan Wolfinger, Russell D., Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O’Lone, Raegan, Pine, P. Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S., Thompson, Karol L.
Cyhoeddwyd yn BMC Biotechnol (2018)

Identification of platform-independent gene expression markers of cisplatin nephrotoxicity.

gan Thompson, Karol L, Afshari, Cynthia A, Amin, Rupesh P, Bertram, Timothy A, Car, Bruce, Cunningham, Michael, Kind, Clive, Kramer, Jeffrey A, Lawton, Michael, Mirsky, Michael, Naciff, Jorge M, Oreffo, Victor, Pine, P Scott, Sistare, Frank D
Cyhoeddwyd 2004

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

gan Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Liu, Jie, Qian, Hui-Rong, Quackenbush, John, Pettit, Syril, Thompson, Karol L
Cyhoeddwyd 2008

Non-Lethal Endotoxin Injection: A Rat Model of Hypercoagulability

gan Brooks, Marjory B., Turk, James R., Guerrero, Abraham, Narayanan, Padma K., Nolan, John P., Besteman, Elizabeth G., Wilson, Dennis W., Thomas, Roberta A., Fishman, Cindy E., Thompson, Karol L., Ellinger-Ziegelbauer, Heidrun, Pierson, Jennifer B., Paulman, April, Chiang, Alan Y., Schultze, Albert E.
Cyhoeddwyd yn PLoS One (2017)

Overview on the application of transcription profiling using selected nephrotoxicants for toxicology assessment.

gan Kramer, Jeffrey A, Pettit, Syril D, Amin, Rupesh P, Bertram, Timothy A, Car, Bruce, Cunningham, Michael, Curtiss, Sandra W, Davis, John W, Kind, Clive, Lawton, Michael, Naciff, Jorge M, Oreffo, Victor, Roman, Richard J, Sistare, Frank D, Stevens, James, Thompson, Karol, Vickers, Alison E, Wild, Stacey, Afshari, Cynthia A
Cyhoeddwyd 2004

Identification of putative gene based markers of renal toxicity.

gan Amin, Rupesh P, Vickers, Alison E, Sistare, Frank, Thompson, Karol L, Roman, Richard J, Lawton, Michael, Kramer, Jeffrey, Hamadeh, Hisham K, Collins, Jennifer, Grissom, Sherry, Bennett, Lee, Tucker, C Jeffrey, Wild, Stacie, Kind, Clive, Oreffo, Victor, Davis, John W, Curtiss, Sandra, Naciff, Jorge M, Cunningham, Michael, Tennant, Raymond, Stevens, James, Car, Bruce, Bertram, Timothy A, Afshari, Cynthia A
Cyhoeddwyd 2004

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats

gan Thompson, Karol L., Rosenzweig, Barry A., Pine, P. Scott, Retief, Jacques, Turpaz, Yaron, Afshari, Cynthia A., Hamadeh, Hisham K., Damore, Michael A., Boedigheimer, Michael, Blomme, Eric, Ciurlionis, Rita, Waring, Jeffrey F., Fuscoe, James C., Paules, Richard, Tucker, Charles J., Fare, Thomas, Coffey, Ernest M., He, Yudong, Collins, Patrick J., Jarnagin, Kurt, Fujimoto, Susan, Ganter, Brigitte, Kiser, Gretchen, Kaysser-Kranich, Tamma, Sina, Joseph, Sistare, Frank D.
Cyhoeddwyd 2005

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics

gan Pine, P. Scott, Lund, Steven P., Parsons, Jerod R., Vang, Lindsay K., Mahabal, Ashish A., Cinquini, Luca, Kelly, Sean C., Kincaid, Heather, Crichton, Daniel J., Spira, Avrum, Liu, Gang, Gower, Adam C., Pass, Harvey I., Goparaju, Chandra, Dubinett, Steven M., Krysan, Kostyantyn, Stass, Sanford A., Kukuruga, Debra, Van Keuren-Jensen, Kendall, Courtright-Lim, Amanda, Thompson, Karol L., Rosenzweig, Barry A., Sorbara, Lynn, Srivastava, Sudhir, Salit, Marc L.
Cyhoeddwyd yn BMC Genomics (2018)