VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue

Por Chen, Yunxin, Yao, Hui, Thompson, Erika J., Tannir, Nizar M., Weinstein, John N., Su, Xiaoping
Publicado em 2013

Comparison of Three Libraries for 10x Genomics Single Cell Immune TCR Repertoire Profiling

Por Chen, Yunxin, Pollock, David P., Qi, Yuan, lm, Jin Seon, Su, Xiaoping, Thompson, Erika J.
Publicado no J Biomol Tech (2019)

Draft Genome Sequence of New Leprosy Agent Mycobacterium lepromatosis

Por Han, Xiang Y., Mistry, Nipun A., Thompson, Erika J., Tang, Hong-Li, Khanna, Kanhav, Zhang, Li
Publicado no Genome Announc (2015)

Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome

Por Petrosyan, Varduhi, Holder, Michael, Ajami, Nadim J., Petrosino, Joseph F., Sahasrabhojane, Pranoti, Thompson, Erika J., Kalia, Awdhesh, Shelburne, Samuel A.
Publicado no Genome Announc (2016)

Comparative Sequence Analysis of Mycobacterium leprae and the New Leprosy-Causing Mycobacterium lepromatosis

Por Han, Xiang Y., Sizer, Kurt C., Thompson, Erika J., Kabanja, Juma, Li, Jun, Hu, Peter, Gómez-Valero, Laura, Silva, Francisco J.
Publicado em 2009

Draft Genome Sequences of Four Genetically Distinct Human Isolates of Streptococcus dysgalactiae subsp. equisimilis

Por Evers, Caitlin, Patel, Khushali, Petrosyan, Varduhi, Morrison, Clay, Varghese, Viju, Chu, Randy A., Baig, Aymen, Thompson, Erika J., Chase, Michael, Hu, Peter C., Kalia, Awdhesh
Publicado no Genome Announc (2015)

Landscape of DNA Virus Associations across Human Malignant Cancers: Analysis of 3,775 Cases Using RNA-Seq

Por Khoury, Joseph D., Tannir, Nizar M., Williams, Michelle D., Chen, Yunxin, Yao, Hui, Zhang, Jianping, Thompson, Erika J., Meric-Bernstam, Funda, Medeiros, L. Jeffrey, Weinstein, John N., Su, Xiaoping
Publicado em 2013

Characterization of long non‐coding RNA transcriptome in clear‐cell renal cell carcinoma by next‐generation deep sequencing

Por Malouf, Gabriel G., Zhang, Jianping, Yuan, Ying, Compérat, Eva, Rouprêt, Morgan, Cussenot, Olivier, Chen, Yunxin, Thompson, Erika J., Tannir, Nizar M., Weinstein, John N., Valero, Vicente, Khayat, David, Spano, Jean-Philippe, Su, Xiaoping
Publicado no Mol Oncol (2014)

Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations

Por Jiang, Yunyun, Malouf, Gabriel G., Zhang, Jianping, Zheng, Xiaofeng, Chen, Yunxin, Thompson, Erika J., Weinstein, John N., Yuan, Ying, Spano, Jean-Philippe, Broaddus, Russell, Tannir, Nizar M., Khayat, David, Lu, Karen H., Su, Xiaoping
Publicado no Oncotarget (2015)

Next-generation sequencing of translocation renal cell carcinoma reveals novel RNA splicing partners and frequent mutations of chromatin remodeling genes

Por Malouf, Gabriel G., Su, Xiaoping, Yao, Hui, Gao, Jianjun, Xiong, Liangwen, He, Qiuming, Compérat, Eva, Couturier, Jérôme, Molinié, Vincent, Escudier, Bernard, Camparo, Philippe, Doss, Denaha J., Thompson, Erika J, Khayat, David, Wood, Christopher G., Yu, Willie, Teh, Bin T., Weinstein, John, Tannir, Nizar M.
Publicado em 2014

NSD1 Inactivation and SETD2 Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas

Por Su, Xiaoping, Zhang, Jianping, Mouawad, Roger, Compérat, Eva, Rouprêt, Morgan, Allanic, Frederick, Parra, Jérôme, Bitker, Marc-Olivier, Thompson, Erika J., Gowrishankar, Banumathy, Houldsworth, Jane, Weinstein, John N., Tost, Jorg, Broom, Bradley M., Khayat, David, Spano, Jean-Philippe, Tannir, Nizar M., Malouf, Gabriel G.
Publicado no Cancer Res (2017)

Genetic rescue of lineage-balanced blood cell production reveals a crucial role for STAT3 antiinflammatory activity in hematopoiesis

Por Zhang, Huiyuan, Li, Haiyan S., Hillmer, Emily J., Zhao, Yang, Chrisikos, Taylor T., Hu, Hongbo, Wu, Xiao, Thompson, Erika J., Clise-Dwyer, Karen, Millerchip, Karen A., Wei, Yue, Puebla-Osorio, Nahum, Kaushik, Saakshi, Santos, Margarida A., Wang, Bin, Garcia-Manero, Guillermo, Wang, Jing, Sun, Shao-Cong, Watowich, Stephanie S.
Publicado no Proc Natl Acad Sci U S A (2018)

Hypervirulent group A Streptococcus emergence in an acaspular background is associated with marked remodeling of the bacterial cell surface

Por Galloway-Peña, Jessica, DebRoy, Sruti, Brumlow, Chelcy, Li, Xiqi, Tran, Truc T., Horstmann, Nicola, Yao, Hui, Chen, Ken, Wang, Fang, Pan, Bih-Fang, Hawke, David H., Thompson, Erika J., Arias, Cesar A., Fowler, Vance G., Bhatti, Micah M., Kalia, Awdhesh, Flores, Anthony R., Shelburne, Samuel A.
Publicado no PLoS One (2018)