Persistence of Ambigrammatic Narnaviruses Requires Translation of the Reverse Open Reading Frame

Autor Retallack, Hanna, Popova, Katerina D., Laurie, Matthew T., Sunshine, Sara, DeRisi, Joseph L.
Vydáno v J Virol (2021)

HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay

Autor Sunshine, Sara, Kirchner, Rory, Amr, Sami S., Mansur, Leandra, Shakhbatyan, Rimma, Kim, Michelle, Bosque, Alberto, Siliciano, Robert F., Planelles, Vicente, Hofmann, Oliver, Ho Sui, Shannan, Li, Jonathan Z.
Vydáno v J Virol (2016)

SMN Protein Can Be Reliably Measured in Whole Blood with an Electrochemiluminescence (ECL) Immunoassay: Implications for Clinical Trials

Autor Zaworski, Phillip, von Herrmann, Katharine M., Taylor, Shannon, Sunshine, Sara S., McCarthy, Kathleen, Risher, Nicole, Newcomb, Tara, Weetall, Marla, Prior, Thomas W., Swoboda, Kathryn J., Chen, Karen S., Paushkin, Sergey
Vydáno v PLoS One (2016)

Identification of novel, clinically correlated autoantigens in the monogenic autoimmune syndrome APS1 by proteome-wide PhIP-Seq

Autor Vazquez, Sara E, Ferré, Elise MN, Scheel, David W, Sunshine, Sara, Miao, Brenda, Mandel-Brehm, Caleigh, Quandt, Zoe, Chan, Alice Y, Cheng, Mickie, German, Michael, Lionakis, Michail, DeRisi, Joseph L, Anderson, Mark S
Vydáno v eLife (2020)

The pulmonary metatranscriptome prior to pediatric HCT identifies post-HCT lung injury

Autor Zinter, Matt S., Lindemans, Caroline A., Versluys, Birgitta A., Mayday, Madeline Y., Sunshine, Sara, Reyes, Gustavo, Sirota, Marina, Sapru, Anil, Matthay, Michael A., Kharbanda, Sandhya, Dvorak, Christopher C., Boelens, Jaap J., DeRisi, Joseph L.
Vydáno v Blood (2021)

Peripheral Blood Lymphocyte HIV DNA Levels Correlate with HIV Associated Neurocognitive Disorders in Nigeria

Autor Jumare, Jibreel, Sunshine, Sara, Ahmed, Hayat, El-Kamary, Samer S., Magder, Laurence, Hungerford, Laura, Burdo, Tricia, Eyzaguirre, Lindsay M., Umlauf, Anya, Cherner, Mariana, Abimiku, Alash’le, Charurat, Man, Li, Jonathan Z., Blattner, William A., Royal, Walter
Vydáno v J Neurovirol (2017)

Performance characteristics of a rapid SARS-CoV-2 antigen detection assay at a public plaza testing site in San Francisco

Autor Pilarowski, Genay, Lebel, Paul, Sunshine, Sara, Liu, Jamin, Crawford, Emily, Marquez, Carina, Rubio, Luis, Chamie, Gabriel, Martinez, Jackie, Peng, James, Black, Douglas, Wu, Wesley, Pak, John, Laurie, Matthew T., Jones, Diane, Miller, Steve, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Nakamura, Robert, Tulier-Laiwa, Valerie, Petersen, Maya, Havlir, Diane V., DeRisi, Joseph
Vydáno v medRxiv (2020)

Performance Characteristics of a Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco

Autor Pilarowski, Genay, Lebel, Paul, Sunshine, Sara, Liu, Jamin, Crawford, Emily, Marquez, Carina, Rubio, Luis, Chamie, Gabriel, Martinez, Jackie, Peng, James, Black, Douglas, Wu, Wesley, Pak, John, Laurie, Matthew T, Jones, Diane, Miller, Steve, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Nakamura, Robert, Tulier-Laiwa, Valerie, Petersen, Maya, Havlir, Diane V, DeRisi, Joseph
Vydáno v J Infect Dis (2021)

Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men

Autor Samuel, Ryan M., Majd, Homa, Richter, Mikayla N., Ghazizadeh, Zaniar, Zekavat, Seyedeh Maryam, Navickas, Albertas, Ramirez, Jonathan T., Asgharian, Hosseinali, Simoneau, Camille R., Bonser, Luke R., Koh, Kyung Duk, Garcia-Knight, Miguel, Tassetto, Michel, Sunshine, Sara, Farahvashi, Sina, Kalantari, Ali, Liu, Wei, Andino, Raul, Zhao, Hongyu, Natarajan, Pradeep, Erle, David J., Ott, Melanie, Goodarzi, Hani, Fattahi, Faranak
Vydáno v Cell Stem Cell (2020)

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

Autor Peng, James, Mann, Sabrina A, Mitchell, Anthea M, Liu, Jamin, Laurie, Matthew T., Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M., McGeever, Aaron, Chow, Eric D., Team, IDseq, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Vydáno v medRxiv (2021)

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a...

Autor Peng, James, Liu, Jamin, Mann, Sabrina A, Mitchell, Anthea M, Laurie, Matthew T, Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M, McGeever, Aaron, Chow, Eric D, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Vydáno v Clin Infect Dis (2021)

Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19

Autor Tsitsiklis, Alexandra, Zha, Beth Shoshana, Byrne, Ashley, Devoe, Catherine, Levan, Sophia, Rackaityte, Elze, Sunshine, Sara, Mick, Eran, Ghale, Rajani, Jauregui, Alejandra, Sarma, Aartik, Neff, Norma, Serpa, Paula Hayakawa, Deiss, Thomas J., Kistler, Amy, Carrillo, Sidney, Ansel, K. Mark, Leligdowicz, Aleksandra, Christenson, Stephanie, Jones, Norman, Wu, Bing, Darmanis, Spyros, Matthay, Michael A., Lynch, Susan V., DeRisi, Joseph L., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Woodruff, Prescott G., Erle, David J., Rosenberg, Oren, Calfee, Carolyn S., Langelier, Charles R.
Vydáno v Res Sq (2021)

Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19

Autor Tsitsiklis, Alexandra, Zha, Beth Shoshana, Byrne, Ashley, DeVoe, Catherine, Rackaityte, Elze, Levan, Sophia, Sunshine, Sara, Mick, Eran, Ghale, Rajani, Love, Christina, Tarashansky, Alexander J., Pisco, Angela, Albright, Jack, Jauregui, Alejandra, Sarma, Aartik, Neff, Norma, Serpa, Paula Hayakawa, Deiss, Thomas J., Kistler, Amy, Carrillo, Sidney, Ansel, K. Mark, Leligdowicz, Aleksandra, Christenson, Stephanie, Detweiler, Angela, Jones, Norman G., Wu, Bing, Darmanis, Spyros, Lynch, Susan V., DeRisi, Joseph L., Matthay, Michael A., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Woodruff, Prescott G., Erle, David J., Rosenberg, Oren, Calfee, Carolyn S., Langelier, Charles R.
Vydáno v medRxiv (2021)

Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms

Autor Song, Eric, Bartley, Christopher M., Chow, Ryan D., Ngo, Thomas T., Jiang, Ruoyi, Zamecnik, Colin R., Dandekar, Ravi, Loudermilk, Rita P., Dai, Yile, Liu, Feimei, Sunshine, Sara, Liu, Jamin, Wu, Wesley, Hawes, Isobel A., Alvarenga, Bonny D., Huynh, Trung, McAlpine, Lindsay, Rahman, Nur-Taz, Geng, Bertie, Chiarella, Jennifer, Goldman-Israelow, Benjamin, Vogels, Chantal B.F., Grubaugh, Nathan D., Casanovas-Massana, Arnau, Phinney, Brett S., Salemi, Michelle, Alexander, Jessa R., Gallego, Juan A., Lencz, Todd, Walsh, Hannah, Wapniarski, Anne E., Mohanty, Subhasis, Lucas, Carolina, Klein, Jon, Mao, Tianyang, Oh, Jieun, Ring, Aaron, Spudich, Serena, Ko, Albert I., Kleinstein, Steven H., Pak, John, DeRisi, Joseph L., Iwasaki, Akiko, Pleasure, Samuel J., Wilson, Michael R., Farhadian, Shelli F.
Vydáno v Cell Rep Med (2021)

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

Autor Crawford, Emily D., Acosta, Irene, Ahyong, Vida, Anderson, Erika C., Arevalo, Shaun, Asarnow, Daniel, Axelrod, Shannon, Ayscue, Patrick, Azimi, Camillia S., Azumaya, Caleigh M., Bachl, Stefanie, Bachmutsky, Iris, Bhaduri, Aparna, Brown, Jeremy Bancroft, Batson, Joshua, Behnert, Astrid, Boileau, Ryan M., Bollam, Saumya R., Bonny, Alain R., Booth, David, Borja, Michael Jerico B., Brown, David, Buie, Bryan, Burnett, Cassandra E., Byrnes, Lauren E., Cabral, Katelyn A., Cabrera, Joana P., Caldera, Saharai, Canales, Gabriela, Castañeda, Gloria R., Chan, Agnes Protacio, Chang, Christopher R., Charles-Orszag, Arthur, Cheung, Carly, Chio, Unseng, Chow, Eric D., Citron, Y. Rose, Cohen, Allison, Cohn, Lillian B., Chiu, Charles, Cole, Mitchel A., Conrad, Daniel N., Constantino, Angela, Cote, Andrew, Crayton-Hall, Tre’Jon, Darmanis, Spyros, Detweiler, Angela M., Dial, Rebekah L., Dong, Shen, Duarte, Elias M., Dynerman, David, Egger, Rebecca, Fanton, Alison, Frumm, Stacey M., Fu, Becky Xu Hua, Garcia, Valentina E., Garcia, Julie, Gladkova, Christina, Goldman, Miriam, Gomez-Sjoberg, Rafael, Gordon, M. Grace, Grove, James C. R., Gupta, Shweta, Haddjeri-Hopkins, Alexis, Hadley, Pierce, Haliburton, John, Hao, Samantha L., Hartoularos, George, Herrera, Nadia, Hilberg, Melissa, Ho, Kit Ying E., Hoppe, Nicholas, Hosseinzadeh, Shayan, Howard, Conor J., Hussmann, Jeffrey A., Hwang, Elizabeth, Ingebrigtsen, Danielle, Jackson, Julia R., Jowhar, Ziad M., Kain, Danielle, Kim, James Y. S., Kistler, Amy, Kreutzfeld, Oriana, Kulsuptrakul, Jessie, Kung, Andrew F., Langelier, Charles, Laurie, Matthew T., Lee, Lena, Leng, Kun, Leon, Kristoffer E., Leonetti, Manuel D., Levan, Sophia R., Li, Sam, Li, Aileen W., Liu, Jamin, Lubin, Heidi S., Lyden, Amy, Mann, Jennifer, Mann, Sabrina, Margulis, Gorica, Marquez, Diana M., Marsh, Bryan P., Martyn, Calla, McCarthy, Elizabeth E., McGeever, Aaron, Merriman, Alexander F., Meyer, Lauren K., Miller, Steve, Moore, Megan K., Mowery, Cody T., Mukhtar, Tanzila, Mwakibete, Lusajo L., Narez, Noelle, Neff, Norma F., Osso, Lindsay A., Oviedo, Diter, Peng, Suping, Phelps, Maira, Phong, Kiet, Picard, Peter, Pieper, Lindsey M., Pincha, Neha, Pisco, Angela Oliveira, Pogson, Angela, Pourmal, Sergei, Puccinelli, Robert R., Puschnik, Andreas S., Rackaityte, Elze, Raghavan, Preethi, Raghavan, Madhura, Reese, James, Replogle, Joseph M., Retallack, Hanna, Reyes, Helen, Rose, Donald, Rosenberg, Marci F., Sanchez-Guerrero, Estella, Sattler, Sydney M., Savy, Laura, See, Stephanie K., Sellers, Kristin K., Serpa, Paula Hayakawa, Sheehy, Maureen, Sheu, Jonathan, Silas, Sukrit, Streithorst, Jessica A., Strickland, Jack, Stryke, Doug, Sunshine, Sara, Suslow, Peter, Sutanto, Renaldo, Tamura, Serena, Tan, Michelle, Tan, Jiongyi, Tang, Alice, Tato, Cristina M., Taylor, Jack C., Tenvooren, Iliana, Thompson, Erin M., Thornborrow, Edward C., Tse, Eric, Tung, Tony, Turner, Marc L., Turner, Victoria S., Turnham, Rigney E., Turocy, Mary J., Vaidyanathan, Trisha V., Vainchtein, Ilia D., Vanaerschot, Manu, Vazquez, Sara E., Wandler, Anica M., Wapniarski, Anne, Webber, James T., Weinberg, Zara Y., Westbrook, Alexandra, Wong, Allison W., Wong, Emily, Worthington, Gajus, Xie, Fang, Xu, Albert, Yamamoto, Terrina, Yang, Ying, Yarza, Fauna, Zaltsman, Yefim, Zheng, Tina, DeRisi, Joseph L.
Vydáno v PLoS Pathog (2020)