MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome–Host Interactions

מאת Andrighetti, Tahila, Bohar, Balazs, Lemke, Ney, Sudhakar, Padhmanand, Korcsmaros, Tamas
הוצא לאור ב Cells (2020)

Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions

מאת Sudhakar, Padhmanand, Machiels, Kathleen, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine
הוצא לאור ב Front Microbiol (2021)

What We Learned From Big Data for Autophagy Research

מאת Jacomin, Anne-Claire, Gul, Lejla, Sudhakar, Padhmanand, Korcsmaros, Tamas, Nezis, Ioannis P.
הוצא לאור ב Front Cell Dev Biol (2018)

Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton

מאת Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Dobler, Irene W, Zeng, An-Ping
יצא לאור 2014

Erratum to: Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton

מאת Sudhakar, Padhmanand, Reck, Michael, Wang, Wei, He, Feng Q, Wagner-Döbler, Irene, Zeng, An-Ping
הוצא לאור ב BMC Genomics (2014)

Big data in IBD: big progress for clinical practice

מאת Seyed Tabib, Nasim Sadat, Madgwick, Matthew, Sudhakar, Padhmanand, Verstockt, Bram, Korcsmaros, Tamas, Vermeire, Séverine
הוצא לאור ב Gut (2020)

Understanding the Molecular Drivers of Disease Heterogeneity in Crohn’s Disease Using Multi-omic Data Integration and Network Analysis

מאת Sudhakar, Padhmanand, Verstockt, Bram, Cremer, Jonathan, Verstockt, Sare, Sabino, João, Ferrante, Marc, Vermeire, Séverine
הוצא לאור ב Inflamm Bowel Dis (2020)

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

מאת Demeter, Amanda, Romero-Mulero, Mari Carmen, Csabai, Luca, Ölbei, Márton, Sudhakar, Padhmanand, Haerty, Wilfried, Korcsmáros, Tamás
הוצא לאור ב Sci Rep (2020)

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains

מאת Song Lifu, Sudhakar Padhmanand, Wang Wei, Conrads Georg, Brock Anke, Sun Jibin, Wagner-Döbler Irene, Zeng An-Ping
יצא לאור 2012-04-01

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains

מאת Song, Lifu, Sudhakar, Padhmanand, Wang, Wei, Conrads, Georg, Brock, Anke, Sun, Jibin, Wagner-Döbler, Irene, Zeng, An-Ping
יצא לאור 2012

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

מאת Métris, Aline, Sudhakar, Padhmanand, Fazekas, David, Demeter, Amanda, Ari, Eszter, Olbei, Marton, Branchu, Priscilla, Kingsley, Rob A., Baranyi, Jozsef, Korcsmáros, Tamas
הוצא לאור ב NPJ Syst Biol Appl (2017)

Targeted interplay between bacterial pathogens and host autophagy

מאת Sudhakar, Padhmanand, Jacomin, Anne-Claire, Hautefort, Isabelle, Samavedam, Siva, Fatemian, Koorosh, Ari, Eszter, Gul, Leila, Demeter, Amanda, Jones, Emily, Korcsmaros, Tamas, Nezis, Ioannis P.
הוצא לאור ב Autophagy (2019)

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

מאת Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
הוצא לאור ב PLoS Comput Biol (2021)

Evolution of regulatory networks associated with traits under selection in cichlids

מאת Mehta, Tarang K., Koch, Christopher, Nash, Will, Knaack, Sara A., Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
הוצא לאור ב Genome Biol (2021)

MDH1 and MPP7 regulate autophagy in pancreatic ductal adenocarcinoma

מאת New, Maria, Van Acker, Tim, Sakamaki, Jun-ichi, Jiang, Ming, Saunders, Rebecca E., Long, Jaclyn, Wang, Victoria M.-Y., Behrens, Axel, Cerveira, Joana, Sudhakar, Padhmanand, Korcsmaros, Tamas, Jefferies, Harold B. J., Ryan, Kevin M., Howell, Michael, Tooze, Sharon A.
הוצא לאור ב Cancer Res (2019)

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

מאת Jones, Emily J., Matthews, Zoe J., Gul, Lejla, Sudhakar, Padhmanand, Treveil, Agatha, Divekar, Devina, Buck, Jasmine, Wrzesinski, Tomasz, Jefferson, Matthew, Armstrong, Stuart D., Hall, Lindsay J., Watson, Alastair J. M., Carding, Simon R., Haerty, Wilfried, Di Palma, Federica, Mayer, Ulrike, Powell, Penny P., Hautefort, Isabelle, Wileman, Tom, Korcsmaros, Tamas
הוצא לאור ב Dis Model Mech (2019)