Improved Normalization of Systematic Biases Affecting Ion Current Measurements in Label-free Proteomics Data

Por Rudnick, Paul A., Wang, Xia, Yan, Xinjian, Sedransk, Nell, Stein, Stephen E.
Publicado em 2014

Analysis of Human Plasma Metabolites across Different Liquid Chromatography - Mass Spectrometry Platforms: Cross-platform Transferable Chemical Signatures

Por Telu, Kelly H., Yan, Xinjian, Wallace, William E., Stein, Stephen E., Simón-Manso, Yamil
Publicado no Rapid Commun Mass Spectrom (2016)

Building Consensus Spectral Libraries for Peptide Identification in Proteomics

Por Lam, Henry, Deutsch, Eric W., Eddes, James S., Eng, Jimmy K., Stein, Stephen E., Aebersold, Ruedi
Publicado em 2008

Comprehensive analysis of protein digestion using six trypsins reveals the origin of trypsin as a significant source of variability in proteomics()

Por Walmsley, Scott J., Rudnick, Paul A., Liang, Yuxue, Dong, Qian, Stein, Stephen E., Nesvizhskii, Alexey I.
Publicado em 2013

Fragmentation of Leucine Enkephalin as a Function of Laser Fluence in a MALDI TOF-TOF

Por Campbell, Jennifer M., Stein, Stephen E., Blank, Paul S., Epstein, Jonathan A., Vestal, Marvin L., Yergey, Alfred L.
Publicado em 2007

Unique para-effect in electron ionization mass spectra of bis(perfluoroacyl) derivatives of bifunctional aminobenzenes()

Por Tretyakov, Kirill V., Todua, Nino G., Borisov, Roman S., Zaikin, Vladimir G., Stein, Stephen E., Mikaia, Anzor I.
Publicado no Rapid Commun Mass Spectrom (2010)

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

Por Loevenich, Sandra N, Brunner, Erich, King, Nichole L, Deutsch, Eric W, Stein, Stephen E, Aebersold, Ruedi, Hafen, Ernst
Publicado em 2009

QC Metrics from CPTAC Raw LC-MS/MS Data Interpreted through Multivariate Statistics

Por Wang, Xia, Chambers, Matthew C., Vega-Montoto, Lorenzo J., Bunk, David M., Stein, Stephen E., Tabb, David L.
Publicado em 2014

Tandem Mass Spectral Libraries of Peptides in Digests of Individual Proteins: Human Serum Albumin (HSA)

Por Dong, Qian, Yan, Xinjian, Kilpatrick, Lisa E., Liang, Yuxue, Mirokhin, Yuri A., Roth, Jeri S., Rudnick, Paul A., Stein, Stephen E.
Publicado em 2014

Electron ionization mass spectra of alkylated sulfabenzamides()

Por Todua, Nino G., Tretyakov, Kirill V., Borisov, Roman S., Zhilyaev, Dmitry I., Zaikin, Vladimir G., Stein, Stephen E., Mikaia, Anzor I.
Publicado no Rapid Commun Mass Spectrom (2011)

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

Por Tu, Chengjian, Rudnick, Paul A., Martinez, Misti Y., Cheek, Kristin L., Stein, Stephen E., Slebos, Robbert J. C., Liebler, Daniel C.
Publicado em 2010

A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline

Por Rudnick, Paul A., Markey, Sanford P., Roth, Jeri, Mirokhin, Yuri, Yan, Xinjian, Tchekhovskoi, Dmitrii V., Edwards, Nathan J., Thangudu, Ratna R., Ketchum, Karen A., Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Stein, Stephen E.
Publicado no J Proteome Res (2016)

Combined Blood/Tissue Analysis for Cancer Biomarker Discovery: Application to Renal Cell Carcinoma

Por Johann, Donald J., Wei, Bih-Rong, Prieto, DaRue A., Chan, King C., Ye, Xiaoying, Valera, Vladimir A., Simpson, R. Mark, Rudnick, Paul A., Xiao, Zhen, Stein, Stephen E., Issaq, Haleem J., Linehan, W. Marston, Veenstra, Timothy D., Blonder, Josip
Publicado em 2010

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy - The Amsterdam Principles

Por Rodriguez, Henry, Snyder, Mike, Uhlén, Mathias, Andrews, Phil, Beavis, Ronald, Borchers, Christoph, Chalkley, Robert J., Cho, Sang Yun, Cottingham, Katie, Dunn, Michael, Dylag, Tomasz, Edgar, Ron, Hare, Peter, Heck, Albert J.R., Hirsch, Roland F., Kennedy, Karen, Kolar, Patrik, Kraus, Hans-Joachim, Mallick, Parag, Nesvizhskii, Alexey, Ping, Peipei, Pontén, Fredrik, Yang, Liming, Yates, John R., Stein, Stephen E., Hermjakob, Henning, Kinsinger, Christopher R., Apweiler, Rolf
Publicado em 2009

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance

Por Paulovich, Amanda G., Billheimer, Dean, Ham, Amy-Joan L., Vega-Montoto, Lorenzo, Rudnick, Paul A., Tabb, David L., Wang, Pei, Blackman, Ronald K., Bunk, David M., Cardasis, Helene L., Clauser, Karl R., Kinsinger, Christopher R., Schilling, Birgit, Tegeler, Tony J., Variyath, Asokan Mulayath, Wang, Mu, Whiteaker, Jeffrey R., Zimmerman, Lisa J., Fenyo, David, Carr, Steven A., Fisher, Susan J., Gibson, Bradford W., Mesri, Mehdi, Neubert, Thomas A., Regnier, Fred E., Rodriguez, Henry, Spiegelman, Cliff, Stein, Stephen E., Tempst, Paul, Liebler, Daniel C.
Publicado em 2010

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)

Por Kinsinger, Christopher R., Apffel, James, Baker, Mark, Bian, Xiaopeng, Borchers, Christoph H., Bradshaw, Ralph, Brusniak, Mi-Youn, Chan, Daniel W., Deutsch, Eric W., Domon, Bruno, Gorman, Jeff, Grimm, Rudolf, Hancock, William, Hermjakob, Henning, Horn, David, Hunter, Christie, Kolar, Patrik, Kraus, Hans-Joachim, Langen, Hanno, Linding, Rune, Moritz, Robert L., Omenn, Gilbert S., Orlando, Ron, Pandey, Akhilesh, Ping, Peipei, Rahbar, Amir, Rivers, Robert, Seymour, Sean L., Simpson, Richard J., Slotta, Douglas, Smith, Richard D., Stein, Stephen E., Tabb, David L., Tagle, Danilo, Yates, John R., Rodriguez, Henry
Publicado em 2011

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)

Por Kinsinger, Christopher R., Apffel, James, Baker, Mark, Bian, Xiaopeng, Borchers, Christoph H., Bradshaw, Ralph, Brusniak, Mi-Youn, Chan, Daniel W., Deutsch, Eric W., Domon, Bruno, Gorman, Jeff, Grimm, Rudolf, Hancock, William, Hermjakob, Henning, Horn, David, Hunter, Christie, Kolar, Patrik, Kraus, Hans-Joachim, Langen, Hanno, Linding, Rune, Moritz, Robert L., Omenn, Gilbert S., Orlando, Ron, Pandey, Akhilesh, Ping, Peipei, Rahbar, Amir, Rivers, Robert, Seymour, Sean L., Simpson, Richard J., Slotta, Douglas, Smith, Richard D., Stein, Stephen E., Tabb, David L., Tagle, Danilo, Yates, John R., Rodriguez, Henry
Publicado em 2011

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

Por Rudnick, Paul A., Clauser, Karl R., Kilpatrick, Lisa E., Tchekhovskoi, Dmitrii V., Neta, Pedatsur, Blonder, Nikša, Billheimer, Dean D., Blackman, Ronald K., Bunk, David M., Cardasis, Helene L., Ham, Amy-Joan L., Jaffe, Jacob D., Kinsinger, Christopher R., Mesri, Mehdi, Neubert, Thomas A., Schilling, Birgit, Tabb, David L., Tegeler, Tony J., Vega-Montoto, Lorenzo, Variyath, Asokan Mulayath, Wang, Mu, Wang, Pei, Whiteaker, Jeffrey R., Zimmerman, Lisa J., Carr, Steven A., Fisher, Susan J., Gibson, Bradford W., Paulovich, Amanda G., Regnier, Fred E., Rodriguez, Henry, Spiegelman, Cliff, Tempst, Paul, Liebler, Daniel C., Stein, Stephen E.
Publicado em 2010