Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data

gan Tu, Chengjian, Li, Jun, Sheng, Quanhu, Zhang, Ming, Qu, Jun
Cyhoeddwyd 2014

An ion-current-based, comprehensive and reproducible proteomic strategy for comparative characterization of the cellular responses to novel anti-cancer agents in a prostate cell mo...

gan Tu, Chengjian, Li, Jun, Bu, Yahao, Hangauer, David, Qu, Jun
Cyhoeddwyd 2012

Characterization and Proteomic-Transcriptomic Investigation of Monocarboxylate Transporter 6 Knockout Mice: Evidence of a Potential Role in Glucose and Lipid Metabolism

gan Jones, Robert S., Tu, Chengjian, Zhang, Ming, Qu, Jun, Morris, Marilyn E.
Cyhoeddwyd yn Mol Pharmacol (2019)

Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

gan Tu, Chengjian, Li, Jun, Shen, Shichen, Sheng, Quanhu, Shyr, Yu, Qu, Jun
Cyhoeddwyd yn PLoS One (2016)

ICan: An Optimized Ion-Current-Based Quantification Procedure with Enhanced Quantitative Accuracy and Sensitivity in Biomarker Discovery

gan Tu, Chengjian, Sheng, Quanhu, Li, Jun, Shen, Xiaomeng, Zhang, Ming, Shyr, Yu, Qu, Jun
Cyhoeddwyd yn J Proteome Res (2014)

Mapping dynamic histone modification patterns during arsenic-induced malignant transformation of human bladder cells

gan Ge, Yichen, Zhu, Jinqiu, Wang, Xue, Zheng, Nina, Tu, Chengjian, Qu, Jun, Ren, Xuefeng
Cyhoeddwyd yn Toxicol Appl Pharmacol (2018)

Evidence of allosteric coupling between substrate binding and Adx recognition in the vitamin-D carbon-24 hydroxylase CYP24A1

gan Kumar, Amit, Wilderman, P. Ross, Tu, Chengjian, Shen, Shichen, Qu, Jun, Estrada, D. Fernando
Cyhoeddwyd yn Biochemistry (2020)

Proteomic Profiling of the Retinas in a Neonatal Rat Model of Oxygen-Induced Retinopathy with a Reproducible Ion-Current-Based MS1 Approach

gan Tu, Chengjian, Beharry, Kay D., Shen, Xiaomeng, Li, Jun, Wang, Lianshui, Aranda, Jacob V., Qu, Jun
Cyhoeddwyd yn J Proteome Res (2015)

Comparative Characterization of Osteoclasts Derived From Murine Bone Marrow Macrophages and RAW 264.7 Cells Using Quantitative Proteomics

gan Ng, Andrew YH, Tu, Chengjian, Shen, Shichen, Xu, Ding, Oursler, Merry J, Qu, Jun, Yang, Shuying
Cyhoeddwyd yn JBMR Plus (2018)

Improving retinal mitochondrial function as a treatment for age-related macular degeneration

gan Ebeling, Mara C., Polanco, Jorge R., Qu, Jun, Tu, Chengjian, Montezuma, Sandra R., Ferrington, Deborah A.
Cyhoeddwyd yn Redox Biol (2020)

A Combinatorial Peptide Ligand Libraries Treatment Followed by a Dual-Enzyme, Dual-Activation Approach on a nano-flow LC/Orbitrap/ETD for Comprehensive Analysis of Swine Plasma Pro...

gan Tu, Chengjian, Li, Jun, Young, Rebeccah, Page, Brian J., Engler, Frank, Halfon, Marc S., Canty, John M., Qu, Jun
Cyhoeddwyd 2011

Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data

gan Tu, Chengjian, Sheng, Quanhu, Li, Jun, Ma, Danjun, Shen, Xiaomeng, Wang, Xue, Shyr, Yu, Yi, Zhengping, Qu, Jun
Cyhoeddwyd yn J Proteome Res (2015)

Ion-current-based Proteomic Profiling of the Retina in a Rat Model of Smith-Lemli-Opitz Syndrome

gan Tu, Chengjian, Li, Jun, Jiang, Xiaosheng, Sheflin, Lowell G., Pfeffer, Bruce A., Behringer, Matthew, Fliesler, Steven J., Qu, Jun
Cyhoeddwyd 2013

A Large Scale, Ion Current based Proteomics Investigation of Bronchoalveolar Lavage Fluid in Chronic Obstructive Pulmonary Disease Patients

gan Tu, Chengjian, Mammen, Manoj Jacob, Li, Jun, Shen, Xiaomeng, Jiang, Xiaosheng, Hu, Qiang, Wang, Jianmin, Sethi, Sanjay, Qu, Jun
Cyhoeddwyd 2013

Quantitative proteomic profiling of paired cancerous and normal colon epithelial cells isolated freshly from colorectal cancer patients

gan Tu, Chengjian, Mojica, Wilfrido, Straubinger, Robert M., Li, Jun, Shen, Shichen, Qu, Miao, Nie, Lei, Roberts, Rick, An, Bo, Qu, Jun
Cyhoeddwyd yn Proteomics Clin Appl (2017)

Large-Scale, Ion-Current-Based Proteomic Investigation of the Rat Striatal Proteome in a Model of Short- and Long-Term Cocaine Withdrawal

gan Shen, Shichen, Jiang, Xiaosheng, Li, Jun, Straubinger, Robert M., Suarez, Mauricio, Tu, Chengjian, Duan, Xiaotao, Thompson, Alexis C., Qu, Jun
Cyhoeddwyd yn J Proteome Res (2016)

An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts

gan Shen, Xiaomeng, Shen, Shichen, Li, Jun, Hu, Qiang, Nie, Lei, Tu, Chengjian, Wang, Xue, Orsburn, Benjamin, Wang, Jianmin, Qu, Jun
Cyhoeddwyd yn J Proteome Res (2017)

Trypanosoma brucei PRMT1 Is a Nucleic Acid Binding Protein with a Role in Energy Metabolism and the Starvation Stress Response

gan Kafková, Lucie, Tu, Chengjian, Pazzo, Kyle L., Smith, Kyle P., Debler, Erik W., Paul, Kimberly S., Qu, Jun, Read, Laurie K.
Cyhoeddwyd yn mBio (2018)

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

gan Tu, Chengjian, Rudnick, Paul A., Martinez, Misti Y., Cheek, Kristin L., Stein, Stephen E., Slebos, Robbert J. C., Liebler, Daniel C.
Cyhoeddwyd 2010

Surface hydrophobics mediate functional dimerization of CYP121A1 of Mycobacterium tuberculosis

gan Kumar, Amit, Campomizzi, Christopher S., Jay, Natalie, Ferguson, Shaun, Scheffler, Emelie-Jo, Lioi, James, Tu, Chengjian, Qu, Jun, Simons, Claire, Estrada, D. Fernando
Cyhoeddwyd yn Sci Rep (2021)