FCS 3.1 Implementation Guidance()

Autor Bray, Chris, Spidlen, Josef, Brinkman, Ryan R.
Vydáno 2012

ISAC's Gating-ML 2.0 data exchange standard for gating description

Autor Spidlen, Josef, Moore, Wayne, Brinkman, Ryan R.
Vydáno v Cytometry A (2015)

ISAC’s Classification Results File Format (CLR)

Autor Spidlen, Josef, Bray, Chris, Brinkman, Ryan R.
Vydáno v Cytometry A (2014)

Flow Cytometry Bioinformatics

Autor O'Neill, Kieran, Aghaeepour, Nima, Špidlen, Josef, Brinkman, Ryan
Vydáno 2013

Flow cytometry data standards

Autor Spidlen, Josef, Shooshtari, Parisa, Kollmann, Tobias R, Brinkman, Ryan R
Vydáno 2011

XML-based Gating Descriptions in Flow Cytometry

Autor Spidlen, Josef, Leif, Robert, Moore, Wayne, Roederer, Mario, Brinkman, Ryan R.
Vydáno 2008

flowClean: Automated Identification and Removal of Fluorescence Anomalies in Flow Cytometry Data

Autor Fletez-Brant, Kipper, Špidlen, Josef, Brinkman, Ryan R., Roederer, Mario, Chattopadhyay, Pratip K.
Vydáno v Cytometry A (2016)

Data File Standard for Flow Cytometry, Version FCS 3.2

Autor Spidlen, Josef, Moore, Wayne, Parks, David, Goldberg, Michael, Blenman, Kim, Cavenaugh, James S., Brinkman, Ryan
Vydáno v Cytometry A (2020)

Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets

Autor Belkina, Anna C., Ciccolella, Christopher O., Anno, Rina, Halpert, Richard, Spidlen, Josef, Snyder-Cappione, Jennifer E.
Vydáno v Nat Commun (2019)

flowCore: a Bioconductor package for high throughput flow cytometry

Autor Hahne, Florian, LeMeur, Nolwenn, Brinkman, Ryan R, Ellis, Byron, Haaland, Perry, Sarkar, Deepayan, Spidlen, Josef, Strain, Errol, Gentleman, Robert
Vydáno 2009

FuGEFlow: data model and markup language for flow cytometry

Autor Qian, Yu, Tchuvatkina, Olga, Spidlen, Josef, Wilkinson, Peter, Gasparetto, Maura, Jones, Andrew R, Manion, Frank J, Scheuermann, Richard H, Sekaly, Rafick-Pierre, Brinkman, Ryan R
Vydáno 2009

Evaluating flow cytometer performance with weighted quadratic least squares analysis of LED and multi-level bead data

Autor Parks, David R., Khettabi, Faysal El, Chase, Eric, Hoffman, Robert A., Perfetto, Stephen P., Spidlen, Josef, Wood, James C.S., Moore, Wayne A., Brinkman, Ryan R.
Vydáno v Cytometry A (2017)

Data Standards for Flow Cytometry

Autor SPIDLEN, JOSEF, GENTLEMAN, ROBERT C., HAALAND, PERRY D., LANGILLE, MORGAN, MEUR, NOLWENN LE, OCHS, MICHAEL F., SCHMITT, CHARLES, SMITH, CLAYTON A., TREISTER, ADAM S., BRINKMAN, RYAN R.
Vydáno 2006

AutoSpill is a principled framework that simplifies the analysis of multichromatic flow cytometry data

Autor Roca, Carlos P., Burton, Oliver T., Gergelits, Václav, Prezzemolo, Teresa, Whyte, Carly E., Halpert, Richard, Kreft, Łukasz, Collier, James, Botzki, Alexander, Spidlen, Josef, Humblet-Baron, Stéphanie, Liston, Adrian
Vydáno v Nat Commun (2021)

GenePattern flow cytometry suite

Autor Spidlen, Josef, Barsky, Aaron, Breuer, Karin, Carr, Peter, Nazaire, Marc-Danie, Hill, Barbara Allen, Qian, Yu, Liefeld, Ted, Reich, Michael, Mesirov, Jill P, Wilkinson, Peter, Scheuermann, Richard H, Sekaly, Rafick-Pierre, Brinkman, Ryan R
Vydáno 2013

Methodology for Evaluating and Comparing Flow Cytometers: A Multisite Study of 23 Instruments

Autor Parks, David R., Moore, Wayne A., Brinkman, Ryan R., Chen, Yong, Condello, Danilo, El Khettabi, Faysal, Nolan, John P., Perfetto, Stephen P., Redelman, Doug, Spidlen, Josef, Van Dyke, Jonathan, Wang, Lili, Wood, James C. S.
Vydáno v Cytometry A (2018)

Data File Standard for Flow Cytometry, Version FCS 3.1

Autor Spidlen, Josef, Moore, Wayne, Parks, David, Goldberg, Michael, Bray, Chris, Bierre, Pierre, Gorombey, Peter, Hyun, Bill, Hubbard, Mark, Lange, Simon, Lefebvre, Ray, Leif, Robert, Novo, David, Ostruszka, Leo, Treister, Adam, Wood, James, Murphy, Robert F., Roederer, Mario, Sudar, Damir, Zigon, Robert, Brinkman, Ryan R.
Vydáno 2010

MIFlowCyt: The Minimum Information about a Flow Cytometry Experiment

Autor Lee, Jamie A., Spidlen, Josef, Boyce, Keith, Cai, Jennifer, Crosbie, Nicholas, Dalphin, Mark, Furlong, Jeff, Gasparetto, Maura, Goldberg, Michael, Goralczyk, Elizabeth M., Hyun, Bill, Jansen, Kirstin, Kollmann, Tobias, Kong, Megan, Leif, Robert, McWeeney, Shannon, Moloshok, Thomas D., Moore, Wayne, Nolan, Garry, Nolan, John, Nikolich-Zugich, Janko, Parrish, David, Purcell, Barclay, Qian, Yu, Selvaraj, Biruntha, Smith, Clayton, Tchuvatkina, Olga, Wertheimer, Anne, Wilkinson, Peter, Wilson, Christopher, Wood, James, Zigon, Robert, Scheuermann, Richard H., Brinkman, Ryan R.
Vydáno 2008

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

Autor Cossarizza, Andrea, Chang, Hyun-Dong, Radbruch, Andreas, Acs, Andreas, Adam, Dieter, Adam-Klages, Sabine, Agace, William W., Aghaeepour, Nima, Akdis, Mübeccel, Allez, Matthieu, Almeida, Larissa Nogueira, Alvisi, Giorgia, Anderson, Graham, Andrä, Immanuel, Annunziato, Francesco, Anselmo, Achille, Bacher, Petra, Baldari, Cosima T., Bari, Sudipto, Barnaba, Vincenzo, Barros-Martins, Joana, Battistini, Luca, Bauer, Wolfgang, Baumgart, Sabine, Baumgarth, Nicole, Baumjohann, Dirk, Baying, Bianka, Bebawy, Mary, Becher, Burkhard, Beisker, Wolfgang, Benes, Vladimir, Beyaert, Rudi, Blanco, Alfonso, Boardman, Dominic A., Bogdan, Christian, Borger, Jessica G., Borsellino, Giovanna, Boulais, Philip E., Bradford, Jolene A., Brenner, Dirk, Brinkman, Ryan R., Brooks, Anna E. S., Busch, Dirk H., Büscher, Martin, Bushnell, Timothy P., Calzetti, Federica, Cameron, Garth, Cammarata, Ilenia, Cao, Xuetao, Cardell, Susanna L., Casola, Stefano, Cassatella, Marco A., Cavani, Andrea, Celada, Antonio, Chatenoud, Lucienne, Chattopadhyay, Pratip K., Chow, Sue, Christakou, Eleni, Čičin-Šain, Luka, Clerici, Mario, Colombo, Federico S., Cook, Laura, Cooke, Anne, Cooper, Andrea M., Corbett, Alexandra J., Cosma, Antonio, Cosmi, Lorenzo, Coulie, Pierre G., Cumano, Ana, Cvetkovic, Ljiljana, Dang, Van Duc, Dang-Heine, Chantip, Davey, Martin S., Davies, Derek, De Biasi, Sara, Del Zotto, Genny, Cruz, Gelo Victoriano Dela, Delacher, Michael, Bella, Silvia Della, Dellabona, Paolo, Deniz, Günnur, Dessing, Mark, Di Santo, James P., Diefenbach, Andreas, Dieli, Francesco, Dolf, Andreas, Dörner, Thomas, Dress, Regine J., Dudziak, Diana, Dustin, Michael, Dutertre, Charles-Antoine, Ebner, Friederike, Eckle, Sidonia B. G., Edinger, Matthias, Eede, Pascale, Ehrhardt, Götz R.A., Eich, Marcus, Engel, Pablo, Engelhardt, Britta, Erdei, Anna, Esser, Charlotte, Everts, Bart, Evrard, Maximilien, Falk, Christine S., Fehniger, Todd A., Felipo-Benavent, Mar, Ferry, Helen, Feuerer, Markus, Filby, Andrew, Filkor, Kata, Fillatreau, Simon, Follo, Marie, Förster, Irmgard, Foster, John, Foulds, Gemma A., Frehse, Britta, Frenette, Paul S., Frischbutter, Stefan, Fritzsche, Wolfgang, Galbraith, David W., Gangaev, Anastasia, Garbi, Natalio, Gaudilliere, Brice, Gazzinelli, Ricardo T., Geginat, Jens, Gerner, Wilhelm, Gherardin, Nicholas A., Ghoreschi, Kamran, Gibellini, Lara, Ginhoux, Florent, Goda, Keisuke, Godfrey, Dale I., Goettlinger, Christoph, González-Navajas, Jose M., Goodyear, Carl S., Gori, Andrea, Grogan, Jane L., Grummitt, Daryl, Grützkau, Andreas, Haftmann, Claudia, Hahn, Jonas, Hammad, Hamida, Hämmerling, Günter, Hansmann, Leo, Hansson, Goran, Harpur, Christopher M., Hartmann, Susanne, Hauser, Andrea, Hauser, Anja E., Haviland, David L., Hedley, David, Hernández, Daniela C., Herrera, Guadalupe, Herrmann, Martin, Hess, Christoph, Höfer, Thomas, Hoffmann, Petra, Hogquist, Kristin, Holland, Tristan, Höllt, Thomas, Holmdahl, Rikard, Hombrink, Pleun, Houston, Jessica P., Hoyer, Bimba F., Huang, Bo, Huang, Fang-Ping, Huber, Johanna E., Huehn, Jochen, Hundemer, Michael, Hunter, Christopher A., Hwang, William Y. K., Iannone, Anna, Ingelfinger, Florian, Ivison, Sabine M, Jäck, Hans-Martin, Jani, Peter K., Jávega, Beatriz, Jonjic, Stipan, Kaiser, Toralf, Kalina, Tomas, Kamradt, Thomas, Kaufmann, Stefan H. E., Keller, Baerbel, Ketelaars, Steven L. C., Khalilnezhad, Ahad, Khan, Srijit, Kisielow, Jan, Klenerman, Paul, Knopf, Jasmin, Koay, Hui-Fern, Kobow, Katja, Kolls, Jay K., Kong, Wan Ting, Kopf, Manfred, Korn, Thomas, Kriegsmann, Katharina, Kristyanto, Hendy, Kroneis, Thomas, Krueger, Andreas, Kühne, Jenny, Kukat, Christian, Kunkel, Désirée, Kunze-Schumacher, Heike, Kurosaki, Tomohiro, Kurts, Christian, Kvistborg, Pia, Kwok, Immanuel, Landry, Jonathan, Lantz, Olivier, Lanuti, Paola, LaRosa, Francesca, Lehuen, Agnès, LeibundGut-Landmann, Salomé, Leipold, Michael D., Leung, Leslie Y.T., Levings, Megan K., Lino, Andreia C., Liotta, Francesco, Litwin, Virginia, Liu, Yanling, Ljunggren, Hans-Gustaf, Lohoff, Michael, Lombardi, Giovanna, Lopez, Lilly, López-Botet, Miguel, Lovett-Racke, Amy E., Lubberts, Erik, Luche, Herve, Ludewig, Burkhard, Lugli, Enrico, Lunemann, Sebastian, Maecker, Holden T., Maggi, Laura, Maguire, Orla, Mair, Florian, Mair, Kerstin H., Mantovani, Alberto, Manz, Rudolf A., Marshall, Aaron J., Martínez-Romero, Alicia, Martrus, Glòria, Marventano, Ivana, Maslinski, Wlodzimierz, Matarese, Giuseppe, Mattioli, Anna Vittoria, Maueröder, Christian, Mazzoni, Alessio, McCluskey, James, McGrath, Mairi, McGuire, Helen M., McInnes, Iain B., Mei, Henrik E., Melchers, Fritz, Melzer, Susanne, Mielenz, Dirk, Miller, Stephen D., Mills, Kingston H.G., Minderman, Hans, Mjösberg, Jenny, Moore, Jonni, Moran, Barry, Moretta, Lorenzo, Mosmann, Tim R., Müller, Susann, Multhoff, Gabriele, Muñoz, Luis Enrique, Münz, Christian, Nakayama, Toshinori, Nasi, Milena, Neumann, Katrin, Ng, Lai Guan, Niedobitek, Antonia, Nourshargh, Sussan, Núñez, Gabriel, O’Connor, José-Enrique, Ochel, Aaron, Oja, Anna, Ordonez, Diana, Orfao, Alberto, Orlowski-Oliver, Eva, Ouyang, Wenjun, Oxenius, Annette, Palankar, Raghavendra, Panse, Isabel, Pattanapanyasat, Kovit, Paulsen, Malte, Pavlinic, Dinko, Penter, Livius, Peterson, Pärt, Peth, Christian, Petriz, Jordi, Piancone, Federica, Pickl, Winfried F., Piconese, Silvia, Pinti, Marcello, Pockley, A. Graham, Podolska, Malgorzata Justyna, Poon, Zhiyong, Pracht, Katharina, Prinz, Immo, Pucillo, Carlo E. M., Quataert, Sally A., Quatrini, Linda, Quinn, Kylie M., Radbruch, Helena, Radstake, Tim R. D. J., Rahmig, Susann, Rahn, Hans-Peter, Rajwa, Bartek, Ravichandran, Gevitha, Raz, Yotam, Rebhahn, Jonathan A., Recktenwald, Diether, Reimer, Dorothea, e Sousa, Caetano Reis, Remmerswaal, Ester B.M., Richter, Lisa, Rico, Laura G., Riddell, Andy, Rieger, Aja M., Robinson, J. Paul, Romagnani, Chiara, Rubartelli, Anna, Ruland, Jürgen, Saalmüller, Armin, Saeys, Yvan, Saito, Takashi, Sakaguchi, Shimon, de-Oyanguren, Francisco Sala, Samstag, Yvonne, Sanderson, Sharon, Sandrock, Inga, Santoni, Angela, Sanz, Ramon Bellmàs, Saresella, Marina, Sautes-Fridman, Catherine, Sawitzki, Birgit, Schadt, Linda, Scheffold, Alexander, Scherer, Hans U., Schiemann, Matthias, Schildberg, Frank A., Schimisky, Esther, Schlitzer, Andreas, Schlosser, Josephine, Schmid, Stephan, Schmitt, Steffen, Schober, Kilian, Schraivogel, Daniel, Schuh, Wolfgang, Schüler, Thomas, Schulte, Reiner, Schulz, Axel Ronald, Schulz, Sebastian R., Scottá, Cristiano, Scott-Algara, Daniel, Sester, David P., Shankey, T. Vincent, Silva-Santos, Bruno, Simon, Anna Katharina, Sitnik, Katarzyna M., Sozzani, Silvano, Speiser, Daniel E., Spidlen, Josef, Stahlberg, Anders, Stall, Alan M., Stanley, Natalie, Stark, Regina, Stehle, Christina, Steinmetz, Tobit, Stockinger, Hannes, Takahama, Yousuke, Takeda, Kiyoshi, Tan, Leonard, Tárnok, Attila, Tiegs, Gisa, Toldi, Gergely, Tornack, Julia, Traggiai, Elisabetta, Trebak, Mohamed, Tree, Timothy I.M., Trotter, Joe, Trowsdale, John, Tsoumakidou, Maria, Ulrich, Henning, Urbanczyk, Sophia, van de Veen, Willem, van den Broek, Maries, van der Pol, Edwin, Van Gassen, Sofie, Van Isterdael, Gert, van Lier, René A.W., Veldhoen, Marc, Vento-Asturias, Salvador, Vieira, Paulo, Voehringer, David, Volk, Hans-Dieter, von Borstel, Anouk, von Volkmann, Konrad, Waisman, Ari, Walker, Rachael V., Wallace, Paul K., Wang, Sa A., Wang, Xin M., Ward, Michael D., Ward-Hartstonge, Kirsten A, Warnatz, Klaus, Warnes, Gary, Warth, Sarah, Waskow, Claudia, Watson, James V., Watzl, Carsten, Wegener, Leonie, Weisenburger, Thomas, Wiedemann, Annika, Wienands, Jürgen, Wilharm, Anneke, Wilkinson, Robert John, Willimsky, Gerald, Wing, James B., Winkelmann, Rieke, Winkler, Thomas H., Wirz, Oliver F., Wong, Alicia, Wurst, Peter, Yang, Jennie H. M., Yang, Juhao, Yazdanbakhsh, Maria, Yu, Liping, Yue, Alice, Zhang, Hanlin, Zhao, Yi, Ziegler, Susanne Maria, Zielinski, Christina, Zimmermann, Jakob, Zychlinsky, Arturo
Vydáno v Eur J Immunol (2019)