PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

Por Chen, Yangho, Souaiaia, Tade, Chen, Ting
Publicado em 2009

ComB: SNP Calling and Mapping Analysis for Color and Nucleotide Space Platforms

Por Souaiaia, Tade, Frazier, Zach, Chen, Ting
Publicado em 2011

FadE: whole genome methylation analysis for multiple sequencing platforms

Por Souaiaia, Tade, Zhang, Zheng, Chen, Ting
Publicado em 2013

Whole genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection

Por Campo, D, Lehmann, K, Fjeldsted, C, Souaiaia, T, Kao, J, Nuzhdin, SV
Publicado em 2013

Effect of RNA integrity on uniquely mapped reads in RNA-Seq

Por Chen, Emily A, Souaiaia, Tade, Herstein, Jennifer S, Evgrafov, Oleg V, Spitsyna, Valeria N, Rebolini, Danea F, Knowles, James A
Publicado em 2014

RseqFlow: workflows for RNA-Seq data analysis

Por Wang, Ying, Mehta, Gaurang, Mayani, Rajiv, Lu, Jingxi, Souaiaia, Tade, Chen, Yangho, Clark, Andrew, Yoon, Hee Jae, Wan, Lin, Evgrafov, Oleg V., Knowles, James A., Deelman, Ewa, Chen, Ting
Publicado em 2011

Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders

Por Li, Jing, Zhang, Wangshu, Yang, Hui, Howrigan, Daniel P., Wilkinson, Brent, Souaiaia, Tade, Evgrafov, Oleg V., Genovese, Giulio, Clementel, Veronica A., Tudor, Jennifer C., Abel, Ted, Knowles, James A., Neale, Benjamin M., Wang, Kai, Sun, Fengzhu, Coba, Marcelo P.
Publicado no Nat Neurosci (2017)

Non-coding RNAs derived from an alternatively spliced REST transcript (REST-003) regulate breast cancer invasiveness

Por Sook Lee, Nan, Evgrafov, Oleg V., Souaiaia, Tade, Bonyad, Adrineh, Herstein, Jennifer, Yeun Lee, Joo, Kim, Jihong, Ning, Yan, Sixto, Marcos, Weitz, Andrew C., Lenz, Heinz-Josef, Wang, Kai, Knowles, James A., Press, Michael F., Salvaterra, Paul M., Kirk Shung, K., Chow, Robert H.
Publicado no Sci Rep (2015)

Assessing characteristics of RNA amplification methods for single cell RNA sequencing

Por Dueck, Hannah R., Ai, Rizi, Camarena, Adrian, Ding, Bo, Dominguez, Reymundo, Evgrafov, Oleg V., Fan, Jian-Bing, Fisher, Stephen A., Herstein, Jennifer S., Kim, Tae Kyung, Kim, Jae Mun (Hugo), Lin, Ming-Yi, Liu, Rui, Mack, William J., McGroty, Sean, Nguyen, Joseph D., Salathia, Neeraj, Shallcross, Jamie, Souaiaia, Tade, Spaethling, Jennifer M., Walker, Christopher P., Wang, Jinhui, Wang, Kai, Wang, Wei, Wildberg, Andre, Zheng, Lina, Chow, Robert H., Eberwine, James, Knowles, James A., Zhang, Kun, Kim, Junhyong
Publicado no BMC Genomics (2016)