Halorhodopsin pumps Cl(–) and bacteriorhodopsin pumps protons by a common mechanism that uses conserved electrostatic interactions

door Song, Yifan, Gunner, M. R.
Gepubliceerd in Proc Natl Acad Sci U S A (2014)

MCCE2: Improving Protein pK(a) Calculations with Extensive Side Chain Rotamer Sampling

door SONG, YIFAN, MAO, JUNJUN, GUNNER, M. R.
Gepubliceerd in 2009

Electrostatic Environment of Hemes in Proteins: pK(a)s of Hydroxyl Ligands

door Song, Yifan, Mao, Junjun, Gunner, M. R.
Gepubliceerd in 2006

Calculated Proton Uptake on Anaerobic Reduction of Cytochrome c Oxidase: Is the Reaction Electroneutral?

door Song, Yifan, Michonova-Alexova, Ekaterina, Gunner, M. R.
Gepubliceerd in 2006

Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database

door Han, Min, Song, Yifan, Qian, Jiaqiang, Ming, Dengming
Gepubliceerd in BMC Bioinformatics (2018)

Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations?

door Gunner, M.R., Mao, Junjun, Song, Yifan, Kim, Jinrang
Gepubliceerd in 2006

Pseudorevertants of a Semliki Forest Virus Fusion-Blocking Mutation Reveal a Critical Interchain Interaction in the Core Trimer

door Liu, Catherine Y., Besanceney, Christen, Song, Yifan, Kielian, Margaret
Gepubliceerd in 2010

Long term results after double and single bundle ACL reconstruction: Is there any difference? A meta - analysis of randomized controlled trials

door Dong, Zhenyue, Niu, Yingzhen, Qi, Jianchao, Song, Yifan, Wang, Fei
Gepubliceerd in Acta Orthop Traumatol Turc (2019)

Structure-guided forcefield optimization

door Song, Yifan, Tyka, Michael, Leaver-Fay, Andrew, Thompson, James, Baker, David
Gepubliceerd in 2011

Alternative Polyadenylation: Methods, Findings, and Impacts

door Chen, Wei, Jia, Qi, Song, Yifan, Fu, Haihui, Wei, Gang, Ni, Ting
Gepubliceerd in Genomics Proteomics Bioinformatics (2017)

Evaluation of Trochlear Dysplasia Severity Using Trochlear Angle: A Retrospective Study Based on Computed Tomography (CT) Scans

door Dong, Zhenyue, Niu, Yingzhen, Duan, Guman, Song, Yifan, Qi, Jianchao, Wang, Fei
Gepubliceerd in Med Sci Monit (2018)

One contact for every twelve residues allows robust and accurate topology-level protein structure modeling

door Kim, David E., DiMaio, Frank, Wang, Ray Yu-Ruei, Song, Yifan, Baker, David
Gepubliceerd in 2013

Prediction of Protein Mutational Free Energy: Benchmark and Sampling Improvements Increase Classification Accuracy

door Frenz, Brandon, Lewis, Steven M., King, Indigo, DiMaio, Frank, Park, Hahnbeom, Song, Yifan
Gepubliceerd in Front Bioeng Biotechnol (2020)

Massively parallel determination and modeling of endonuclease substrate specificity

door Thyme, Summer B., Song, Yifan, Brunette, T. J., Szeto, Mindy D., Kusak, Lara, Bradley, Philip, Baker, David
Gepubliceerd in Nucleic Acids Res (2014)

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

door Wang, Ray Yu-Ruei, Song, Yifan, Barad, Benjamin A, Cheng, Yifan, Fraser, James S, DiMaio, Frank
Gepubliceerd in eLife (2016)

Prevalence of diabetic retinopathy among 13473 patients with diabetes mellitus in China: a cross-sectional epidemiological survey in six provinces

door Liu, Yan, Song, Yifan, Tao, Liyuan, Qiu, Weiqiang, Lv, Huibin, Jiang, Xiaodan, Zhang, Mingzhou, Li, Xuemin
Gepubliceerd in BMJ Open (2017)

Antisense transcription regulates the expression of sense gene via alternative polyadenylation

door Shen, Ting, Li, Huan, Song, Yifan, Yao, Jun, Han, Miao, Yu, Ming, Wei, Gang, Ni, Ting
Gepubliceerd in Protein Cell (2017)

Idiopathic renal hypouricemia: A case report and literature review

door Wang, Cuiyu, Wang, Jin, Liu, Song, Liang, Xinhua, Song, Yifan, Feng, Ling, Zhong, Lanxin, Guo, Xiaohua
Gepubliceerd in Mol Med Rep (2019)

Matrine treatment reduces retinal ganglion cell apoptosis in experimental optic neuritis

door Kang, Jian, Liu, Shuqing, Song, Yifan, Chu, Yaojuan, Wang, Mengru, Shi, Yamin, Zhang, Fengyan, Zhu, Lin
Gepubliceerd in Sci Rep (2021)

Rapamycin protects against aristolochic acid nephropathy in mice by potentiating mammalian target of rapamycin-mediated autophagy

door Lin, Fan, Liu, Yunqi, Tang, Lili, Xu, Xiaohui, Zhang, Xueli, Song, Yifan, Chen, Bicheng, Ren, Yeping, Yang, Xiangdong
Gepubliceerd in Mol Med Rep (2021)