Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

Autor Trubl, Gareth, Solonenko, Natalie, Chittick, Lauren, Solonenko, Sergei A., Rich, Virginia I., Sullivan, Matthew B.
Vydáno v PeerJ (2016)

Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept

Autor Duhaime, Melissa B., Solonenko, Natalie, Roux, Simon, Verberkmoes, Nathan C., Wichels, Antje, Sullivan, Matthew B.
Vydáno v Front Microbiol (2017)

Twelve previously unknown phage genera are ubiquitous in global oceans

Autor Holmfeldt, Karin, Solonenko, Natalie, Shah, Manesh, Corrier, Kristen, Riemann, Lasse, VerBerkmoes, Nathan C., Sullivan, Matthew B.
Vydáno 2013

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

Autor Allers, Elke, Moraru, Cristina, Duhaime, Melissa B, Beneze, Erica, Solonenko, Natalie, Barrero-Canosa, Jimena, Amann, Rudolf, Sullivan, Matthew B
Vydáno 2013

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

Autor Howard-Varona, Cristina, Roux, Simon, Dore, Hugo, Solonenko, Natalie E, Holmfeldt, Karin, Markillie, Lye M, Orr, Galya, Sullivan, Matthew B
Vydáno v ISME J (2017)

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

Autor Howard-Varona, Cristina, Roux, Simon, Dore, Hugo, Solonenko, Natalie E, Holmfeldt, Karin, Markillie, Lye M, Orr, Galya, Sullivan, Matthew B
Vydáno v ISME J (2017)

Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands

Autor Warwick-Dugdale, Joanna, Solonenko, Natalie, Moore, Karen, Chittick, Lauren, Gregory, Ann C., Allen, Michael J., Sullivan, Matthew B., Temperton, Ben
Vydáno v PeerJ (2019)

VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature

Autor Zablocki, Olivier, Michelsen, Michelle, Burris, Marie, Solonenko, Natalie, Warwick-Dugdale, Joanna, Ghosh, Romik, Pett-Ridge, Jennifer, Sullivan, Matthew B., Temperton, Ben
Vydáno v PeerJ (2021)

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

Autor Roux, Simon, Solonenko, Natalie E., Dang, Vinh T., Poulos, Bonnie T., Schwenck, Sarah M., Goldsmith, Dawn B., Coleman, Maureen L., Breitbart, Mya, Sullivan, Matthew B.
Vydáno v PeerJ (2016)

Whole-Genome Sequences of Phages p000v and p000y, Which Infect the Bacterial Pathogen Shiga-Toxigenic Escherichia coli

Autor Howard-Varona, Cristina, Vik, Dean R., Solonenko, Natalie E., Gazitua, M. Consuelo, Hobbs, Zack, Honaker, Ryan W., Kinkhabwala, Anika A., Sullivan, Matthew B.
Vydáno v Microbiol Resour Announc (2018)

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Autor Trubl, Gareth, Roux, Simon, Solonenko, Natalie, Li, Yueh-Fen, Bolduc, Benjamin, Rodríguez-Ramos, Josué, Eloe-Fadrosh, Emiley A., Rich, Virginia I., Sullivan, Matthew B.
Vydáno v PeerJ (2019)

Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

Autor Lara, Elena, Holmfeldt, Karin, Solonenko, Natalie, Sà, Elisabet Laia, Ignacio-Espinoza, J. Cesar, Cornejo-Castillo, Francisco M., Verberkmoes, Nathan C., Vaqué, Dolors, Sullivan, Matthew B., Acinas, Silvia G.
Vydáno v PLoS One (2015)

Multiple mechanisms drive phage infection efficiency in nearly identical hosts

Autor Howard-Varona, Cristina, Hargreaves, Katherine R., Solonenko, Natalie E., Markillie, Lye Meng, White, Richard Allen, Brewer, Heather M., Ansong, Charles, Orr, Galya, Adkins, Joshua N., Sullivan, Matthew B.
Vydáno v ISME J (2018)

Clean Low-Biomass Procedures and Their Application to Ancient Ice Core Microorganisms

Autor Zhong, Zhi-Ping, Solonenko, Natalie E., Gazitúa, Maria C., Kenny, Donald V., Mosley-Thompson, Ellen, Rich, Virginia I., Van Etten, James L., Thompson, Lonnie G., Sullivan, Matthew B.
Vydáno v Front Microbiol (2018)

Viral Ecogenomics of Arctic Cryopeg Brine and Sea Ice

Autor Zhong, Zhi-Ping, Rapp, Josephine Z., Wainaina, James M., Solonenko, Natalie E., Maughan, Heather, Carpenter, Shelly D., Cooper, Zachary S., Jang, Ho Bin, Bolduc, Benjamin, Deming, Jody W., Sullivan, Matthew B.
Vydáno v mSystems (2020)

Glacier ice archives nearly 15,000-year-old microbes and phages

Autor Zhong, Zhi-Ping, Tian, Funing, Roux, Simon, Gazitúa, M. Consuelo, Solonenko, Natalie E., Li, Yueh-Fen, Davis, Mary E., Van Etten, James L., Mosley-Thompson, Ellen, Rich, Virginia I., Sullivan, Matthew B., Thompson, Lonnie G.
Vydáno v Microbiome (2021)

Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection

Autor Howard-Varona, Cristina, Vik, Dean R., Solonenko, Natalie E., Li, Yueh-Fen, Gazitua, M. Consuelo, Chittick, Lauren, Samiec, Jennifer K., Jensen, Aubrey E., Anderson, Paige, Howard-Varona, Adrian, Kinkhabwala, Anika A., Abedon, Stephen T., Sullivan, Matthew B.
Vydáno v Antibiotics (Basel) (2018)

Phage-specific metabolic reprogramming of virocells

Autor Howard-Varona, Cristina, Lindback, Morgan M., Bastien, G. Eric, Solonenko, Natalie, Zayed, Ahmed A., Jang, HoBin, Andreopoulos, Bill, Brewer, Heather M., Glavina del Rio, Tijana, Adkins, Joshua N., Paul, Subhadeep, Sullivan, Matthew B., Duhaime, Melissa B.
Vydáno v ISME J (2020)

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

Autor Trubl, Gareth, Jang, Ho Bin, Roux, Simon, Emerson, Joanne B., Solonenko, Natalie, Vik, Dean R., Solden, Lindsey, Ellenbogen, Jared, Runyon, Alexander T., Bolduc, Benjamin, Woodcroft, Ben J., Saleska, Scott R., Tyson, Gene W., Wrighton, Kelly C., Sullivan, Matthew B., Rich, Virginia I.
Vydáno v mSystems (2018)