Computational Design of Auxotrophy-Dependent Microbial Biosensors for Combinatorial Metabolic Engineering Experiments

door Tepper, Naama, Shlomi, Tomer
Gepubliceerd in 2011

MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks

door Vitkin, Edward, Shlomi, Tomer
Gepubliceerd in 2012

Efficient Modeling of MS/MS Data for Metabolic Flux Analysis

door Tepper, Naama, Shlomi, Tomer
Gepubliceerd in PLoS One (2015)

Correction: Efficient Modeling of MS/MS Data for Metabolic Flux Analysis

door Tepper, Naama, Shlomi, Tomer
Gepubliceerd in PLoS One (2015)

Cancer mistunes methylation

door Shlomi, Tomer, Rabinowitz, Joshua D
Gepubliceerd in 2013

Regulatory on/off minimization of metabolic flux changes after genetic perturbations

door Shlomi, Tomer, Berkman, Omer, Ruppin, Eytan
Gepubliceerd in 2005

Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network

door Meshi, Ofer, Shlomi, Tomer, Ruppin, Eytan
Gepubliceerd in 2007

Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism

door Jerby, Livnat, Shlomi, Tomer, Ruppin, Eytan
Gepubliceerd in 2010

Predicting metabolic biomarkers of human inborn errors of metabolism

door Shlomi, Tomer, Cabili, Moran N, Ruppin, Eytan
Gepubliceerd in 2009

Inferring cancer dependencies on metabolic genes from large-scale genetic screens

door Lagziel, Shoval, Lee, Won Dong, Shlomi, Tomer
Gepubliceerd in BMC Biol (2019)

Studying metabolic flux adaptations in cancer through integrated experimental-computational approaches

door Lagziel, Shoval, Lee, Won Dong, Shlomi, Tomer
Gepubliceerd in BMC Biol (2019)

QPath: a method for querying pathways in a protein-protein interaction network

door Shlomi, Tomer, Segal, Daniel, Ruppin, Eytan, Sharan, Roded
Gepubliceerd in 2006

Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States

door Bilu, Yonatan, Shlomi, Tomer, Barkai, Naama, Ruppin, Eytan
Gepubliceerd in 2006

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes

door Borenstein, Elhanan, Shlomi, Tomer, Ruppin, Eytan, Sharan, Roded
Gepubliceerd in 2007

A genome-scale computational study of the interplay between transcriptional regulation and metabolism

door Shlomi, Tomer, Eisenberg, Yariv, Sharan, Roded, Ruppin, Eytan
Gepubliceerd in 2007

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions

door Ulitsky, Igor, Shlomi, Tomer, Kupiec, Martin, Shamir, Ron
Gepubliceerd in 2008

Flux balance analysis accounting for metabolite dilution

door Benyamini, Tomer, Folger, Ori, Ruppin, Eytan, Shlomi, Tomer
Gepubliceerd in 2010

Network-based prediction of metabolic enzymes' subcellular localization

door Mintz-Oron, Shira, Aharoni, Asaph, Ruppin, Eytan, Shlomi, Tomer
Gepubliceerd in 2009

Spatial-fluxomics provides a subcellular-compartmentalized view of reductive glutamine metabolism in cancer cells

door Lee, Won Dong, Mukha, Dzmitry, Aizenshtein, Elina, Shlomi, Tomer
Gepubliceerd in Nat Commun (2019)

A direct comparison of protein interaction confidence assignment schemes

door Suthram, Silpa, Shlomi, Tomer, Ruppin, Eytan, Sharan, Roded, Ideker, Trey
Gepubliceerd in 2006