Integration of EGA secure data access into Galaxy

par Hoogstrate, Youri, Zhang, Chao, Senf, Alexander, Bijlard, Jochem, Hiltemann, Saskia, van Enckevort, David, Repo, Susanna, Heringa, Jaap, Jenster, Guido, Fijneman, Remond J.A., Boiten, Jan-Willem, A. Meijer, Gerrit, Stubbs, Andrew, Rambla, Jordi, Spalding, Dylan, Abeln, Sanne
Publié dans F1000Res (2016)

htsget: a protocol for securely streaming genomic data

par Kelleher, Jerome, Lin, Mike, Albach, C H, Birney, Ewan, Davies, Robert, Gourtovaia, Marina, Glazer, David, Gonzalez, Cristina Y, Jackson, David K, Kemp, Aaron, Marshall, John, Nowak, Andrew, Senf, Alexander, Tovar-Corona, Jaime M, Vikhorev, Alexander, Keane, Thomas M
Publié dans Bioinformatics (2019)

Content discovery and retrieval services at the European Nucleotide Archive

par Silvester, Nicole, Alako, Blaise, Amid, Clara, Cerdeño-Tárraga, Ana, Cleland, Iain, Gibson, Richard, Goodgame, Neil, ten Hoopen, Petra, Kay, Simon, Leinonen, Rasko, Li, Weizhong, Liu, Xin, Lopez, Rodrigo, Pakseresht, Nima, Pallreddy, Swapna, Plaister, Sheila, Radhakrishnan, Rajesh, Rossello, Marc, Senf, Alexander, Smirnov, Dmitriy, Toribio, Ana Luisa, Vaughan, Daniel, Zalunin, Vadim, Cochrane, Guy
Publié dans Nucleic Acids Res (2014)

Major submissions tool developments at the European nucleotide archive

par Amid, Clara, Birney, Ewan, Bower, Lawrence, Cerdeño-Tárraga, Ana, Cheng, Ying, Cleland, Iain, Faruque, Nadeem, Gibson, Richard, Goodgame, Neil, Hunter, Christopher, Jang, Mikyung, Leinonen, Rasko, Liu, Xin, Oisel, Arnaud, Pakseresht, Nima, Plaister, Sheila, Radhakrishnan, Rajesh, Reddy, Kethi, Rivière, Stephane, Rossello, Marc, Senf, Alexander, Smirnov, Dimitriy, Ten Hoopen, Petra, Vaughan, Daniel, Vaughan, Robert, Zalunin, Vadim, Cochrane, Guy
Publié 2012

Facing growth in the European Nucleotide Archive

par Cochrane, Guy, Alako, Blaise, Amid, Clara, Bower, Lawrence, Cerdeño-Tárraga, Ana, Cleland, Iain, Gibson, Richard, Goodgame, Neil, Jang, Mikyung, Kay, Simon, Leinonen, Rasko, Lin, Xiu, Lopez, Rodrigo, McWilliam, Hamish, Oisel, Arnaud, Pakseresht, Nima, Pallreddy, Swapna, Park, Youngmi, Plaister, Sheila, Radhakrishnan, Rajesh, Rivière, Stephane, Rossello, Marc, Senf, Alexander, Silvester, Nicole, Smirnov, Dmitriy, ten Hoopen, Petra, Toribio, Ana, Vaughan, Daniel, Zalunin, Vadim
Publié 2013

The European Genome-phenome Archive of human data consented for biomedical research

par Lappalainen, Ilkka, Almeida-King, Jeff, Kumanduri, Vasudev, Senf, Alexander, Spalding, John Dylan, ur-Rehman, Saif, Saunders, Gary, Kandasamy, Jag, Caccamo, Mario, Leinonen, Rasko, Vaughan, Brendan, Laurent, Thomas, Rowland, Francis, Marin-Garcia, Pablo, Barker, Jonathan, Jokinen, Petteri, Torres, Angel Carreño, de Argila, Jordi Rambla, Llobet, Oscar Martinez, Medina, Ignacio, Puy, Marc Sitges, Alberich, Mario, de la Torre, Sabela, Navarro, Arcadi, Paschall, Justin, Flicek, Paul
Publié dans Nat Genet (2015)

Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data

par Zhang, Chao, Bijlard, Jochem, Staiger, Christine, Scollen, Serena, van Enckevort, David, Hoogstrate, Youri, Senf, Alexander, Hiltemann, Saskia, Repo, Susanna, Pipping, Wibo, Bierkens, Mariska, Payralbe, Stefan, Stringer, Bas, Heringa, Jaap, Stubbs, Andrew, Bonino Da Silva Santos, Luiz Olavo, Belien, Jeroen, Weistra, Ward, Azevedo, Rita, van Bochove, Kees, Meijer, Gerrit, Boiten, Jan-Willem, Rambla, Jordi, Fijneman, Remond, Spalding, J. Dylan, Abeln, Sanne
Publié dans F1000Res (2017)

Assembly information services in the European Nucleotide Archive

par Pakseresht, Nima, Alako, Blaise, Amid, Clara, Cerdeño-Tárraga, Ana, Cleland, Iain, Gibson, Richard, Goodgame, Neil, Gur, Tamer, Jang, Mikyung, Kay, Simon, Leinonen, Rasko, Li, Weizhong, Liu, Xin, Lopez, Rodrigo, McWilliam, Hamish, Oisel, Arnaud, Pallreddy, Swapna, Plaister, Sheila, Radhakrishnan, Rajesh, Rivière, Stephane, Rossello, Marc, Senf, Alexander, Silvester, Nicole, Smirnov, Dmitriy, Squizzato, Silvano, Hoopen, Petra ten, Toribio, Ana Luisa, Vaughan, Daniel, Zalunin, Vadim, Cochrane, Guy
Publié 2014