RetroSeq: transposable element discovery from next-generation sequencing data

Por Keane, Thomas M., Wong, Kim, Adams, David J.
Publicado em 2013

Go retro and get a GRIP

Por Wong, Kim, Adams, David J, Keane, Thomas M
Publicado em 2013

Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system

Por Page, Andrew J., Keane, Thomas M., Naughton, Thomas J.
Publicado em 2010

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

Por Keane, Thomas M., Naughton, Thomas J., McInerney, James O.
Publicado em 2007

Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

Por Wong, Kim, Keane, Thomas M, Stalker, James, Adams, David J
Publicado em 2010

Next-generation sequencing of experimental mouse strains

Por Yalcin, Binnaz, Adams, David J., Flint, Jonathan, Keane, Thomas M.
Publicado em 2012

Next-generation sequencing of vertebrate experimental organisms

Por Turner, Daniel J., Keane, Thomas M., Sudbery, Ian, Adams, David J.
Publicado em 2009

ABACAS: algorithm-based automatic contiguation of assembled sequences

Por Assefa, Samuel, Keane, Thomas M., Otto, Thomas D., Newbold, Chris, Berriman, Matthew
Publicado em 2009

Identification of structural variation in mouse genomes

Por Keane, Thomas M., Wong, Kim, Adams, David J., Flint, Jonathan, Reymond, Alexandre, Yalcin, Binnaz
Publicado em 2014

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

Por Keane, Thomas M, Creevey, Christopher J, Pentony, Melissa M, Naughton, Thomas J, Mclnerney, James O
Publicado em 2006

The fine-scale architecture of structural variants in 17 mouse genomes

Por Yalcin, Binnaz, Wong, Kim, Bhomra, Amarjit, Goodson, Martin, Keane, Thomas M, Adams, David J, Flint, Jonathan
Publicado em 2012

Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System

Por Collins, Cassandra, Keane, Thomas M., Turner, Daniel J., O’Keeffe, Grainne, Fitzpatrick, David A., Doyle, Sean
Publicado em 2013

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

Por Doran, Anthony G., Wong, Kim, Flint, Jonathan, Adams, David J., Hunter, Kent W., Keane, Thomas M.
Publicado no Genome Biol (2016)

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

Por O’Keeffe, Grainne, Hammel, Stephen, Owens, Rebecca A, Keane, Thomas M, Fitzpatrick, David A, Jones, Gary W, Doyle, Sean
Publicado em 2014

Sequencing and characterization of the FVB/NJ mouse genome

Por Wong, Kim, Bumpstead, Suzannah, Van Der Weyden, Louise, Reinholdt, Laura G, Wilming, Laurens G, Adams, David J, Keane, Thomas M
Publicado em 2012

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Por Dolle, Dirk D., Liu, Zhicheng, Cotten, Matthew, Simpson, Jared T., Iqbal, Zamin, Durbin, Richard, McCarthy, Shane A., Keane, Thomas M.
Publicado no Genome Res (2017)

Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents

Por Halligan, Daniel L., Kousathanas, Athanasios, Ness, Rob W., Harr, Bettina, Eöry, Lél, Keane, Thomas M., Adams, David J., Keightley, Peter D.
Publicado em 2013

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers

Por Morgan, Andrew P., Didion, John P., Doran, Anthony G., Holt, James M., McMillan, Leonard, Keane, Thomas M., de Villena, Fernando Pardo-Manuel
Publicado no G3 (Bethesda) (2016)

The genomic landscape shaped by selection on transposable elements across 18 mouse strains

Por Nellåker, Christoffer, Keane, Thomas M, Yalcin, Binnaz, Wong, Kim, Agam, Avigail, Belgard, T Grant, Flint, Jonathan, Adams, David J, Frankel, Wayne N, Ponting, Chris P
Publicado em 2012

Genome-wide genetic screening with chemically-mutagenized haploid embryonic stem cells

Por Forment, Josep V., Herzog, Mareike, Coates, Julia, Konopka, Tomasz, Gapp, Bianca V., Nijman, Sebastian M., Adams, David J., Keane, Thomas M., Jackson, Stephen P.
Publicado no Nat Chem Biol (2016)