Quantitative Analysis of Discovery-Based MS/MS Results

Por Searle, Brian C.
Publicado em 2013

Computational Analysis and Comparison of Continuous and Count-based Label-free Quantitative Proteomic Data

Por Searle, Brian, Chen, Yao-Yi, Li, Ming, Nesvizhskii, Alexey
Publicado em 2012

“Plug-and-play” investigation of the human phosphoproteome by targeted high-resolution mass spectrometry

Por Lawrence, Robert T., Searle, Brian C., Llovet, Ariadna, Villén, Judit
Publicado no Nat Methods (2016)

Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets

Por Searle, Brian C., Gittelman, Rachel M., Manor, Ohad, Akey, Joshua M.
Publicado no Genetics (2016)

A Face in the Crowd: Recognizing Peptides Through Database Search

Por Eng, Jimmy K., Searle, Brian C., Clauser, Karl R., Tabb, David L.
Publicado em 2011

Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments

Por Searle, Brian C., Egertson, Jarrett D., Bollinger, James G., Stergachis, Andrew B., MacCoss, Michael J.
Publicado no Mol Cell Proteomics (2015)

The Skyline Ecosystem: Informatics for Quantitative Mass Spectrometry Proteomics

Por Pino, Lindsay K., Searle, Brian C., Bollinger, James G., Nunn, Brook, MacLean, Brendan, MacCoss, Michael J.
Publicado no Mass Spectrom Rev (2017)

ABRF-sPRG 2013 Study: Development and Characterization of a Proteomics Normalization Standard Consisting of 1000 Stable Isotope Labeled Peptides and a Qualitative Stability Study o...

Por Dufresne, Craig P., Ivanov, Alexander R., Koller, Antonius, Phinney, Brett S., Rose, Kristie L., Rudnick, Paul A., Searle, Brian C., Colangelo, Christopher
Publicado em 2013

PECAN: Library Free Peptide Detection for Data-Independent Acquisition Tandem Mass Spectrometry Data

Por Ting, Ying S., Egertson, Jarrett D., Bollinger, James G., Searle, Brian C., Payne, Samuel H., Noble, William Stafford, MacCoss, Michael J.
Publicado no Nat Methods (2017)

Título não disponível

Por Colangelo, Christopher, Dufresne, Craig P., Ivanov, Alexander R., Koller, Antonius, Phinney, Brett S., Rose, Kristie L., Rudnick, Paul A., Searle, Brian C., Shaffer, Scott A.
Publicado em 2013

ProteinProcessor: A Probabilistic Analysis Using Mass Accuracy and the MS Spectrum

Por Epstein, Jonathan A., Blank, Paul S., Searle, Brian C., Catlin, Aaron D., Cologna, Stephanie M., Olson, Matthew T., Backlund, Peter S., Coorssen, Jens R., Yergey, Alfred L.
Publicado no Proteomics (2016)

ABRF Research Group Development and Characterization of a Proteomics Normalization Standard Consisting of 1,000 Stable Isotope Labeled Peptides

Por Dufresne, Craig, Hawke, David, Ivanov, Alexander R., Koller, Antonius, MacLean, Brendan, Phinney, Brett, Rose, Kristie, Rudnick, Paul, Searle, Brian, Shaffer, Scott, Colangelo, Christopher M.
Publicado em 2014

ABRF 2012: Best Poster Competition

Por Sol-Church, Katia, Knudtson, Kevin L., Kuster-Schock, Elke, Martin, LeRoy, Murray, Janet M., Needleman, David S., Searle, Brian C., Van Ee, James, Zianni, Michael, Jonscher, Karen R.
Publicado em 2012

ABRF 2011 Waters Best Poster Award Winners

Por Sol-Church, Katia, Knudtson, Kevin L., Kuster-Schock, Elke, Martin, LeRoy, Murray, Janet M, Needleman, David S., Rosato, Caprice, Searle, Brian C., Van Ee, James, Zianni, Michael, Jonscher, Karen R.
Publicado em 2011

An Efficient Approach to Evaluate Reporter Ion Behavior from MALDI-MS/MS Data for Quantification Studies using Isobaric Tags

Por Cologna, Stephanie M., Crutchfield, Christopher A., Searle, Brian C., Blank, Paul S., Toth, Cynthia L., Ely, Alexa M., Picache, Jaqueline A., Backlund, Peter S., Wassif, Christopher A., Porter, Forbes D., Yergey, Alfred L.
Publicado no J Proteome Res (2015)

Interlaboratory studies and initiatives developing standards for proteomics

Por Ivanov, Alexander R., Colangelo, Christopher M., Dufresne, Craig P., Friedman, David B., Lilley, Kathryn S., Mechtler, Karl, Phinney, Brett S., Rose, Kristie L., Rudnick, Paul A., Searle, Brian C., Shaffer, Scott A., Weintraub, Susan T.
Publicado em 2013

ABRF 2013: Best Poster Competition

Por Knudtson, Kevin L., Chien, Allis S., Vinas, Natalia G. Reyero, Martin, LeRoy, Murray, Janet M, Rudnick, Paul A, Searle, Brian C., Zianni, Michael, Hunter, Tim C, Van Ee, James, Needleman, David, Kuster-Schock, Elke
Publicado em 2013

A standardized framing for reporting protein identifications in mzIdentML 1.2

Por Seymour, Sean L., Farrah, Terry, Binz, Pierre-Alain, Chalkley, Robert J., Cottrell, John S., Searle, Brian C., Tabb, David L., Vizcaíno, Juan Antonio, Prieto, Gorka, Uszkoreit, Julian, Eisenacher, Martin, Martínez-Bartolomé, Salvador, Ghali, Fawaz, Jones, Andrew R.
Publicado no Proteomics (2014)

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

Por Jones, Andrew R., Eisenacher, Martin, Mayer, Gerhard, Kohlbacher, Oliver, Siepen, Jennifer, Hubbard, Simon J., Selley, Julian N., Searle, Brian C., Shofstahl, James, Seymour, Sean L., Julian, Randall, Binz, Pierre-Alain, Deutsch, Eric W., Hermjakob, Henning, Reisinger, Florian, Griss, Johannes, Vizcaíno, Juan Antonio, Chambers, Matthew, Pizarro, Angel, Creasy, David
Publicado em 2012