Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions

Por Ritchie, David W., Kozakov, Dima, Vajda, Sandor
Publicado em 2008

ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains

Por Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Ritchie, David W.
Publicado no BMC Bioinformatics (2017)

Computational discovery of direct associations between GO terms and protein domains

Por Alborzi, Seyed Ziaeddin, Ritchie, David W., Devignes, Marie-Dominique
Publicado no BMC Bioinformatics (2018)

gEMpicker: a highly parallel GPU-accelerated particle picking tool for cryo-electron microscopy

Por Hoang, Thai V, Cavin, Xavier, Schultz, Patrick, Ritchie, David W
Publicado em 2013

Predicting drug polypharmacology using a novel surface property similarity-based approach

Por Perez-Nueno, Violeta I, Venkatraman, Vishwesh, Mavridis, Lazaros, Ritchie, David W
Publicado em 2011

HexServer: an FFT-based protein docking server powered by graphics processors

Por Macindoe, Gary, Mavridis, Lazaros, Venkatraman, Vishwesh, Devignes, Marie-Dominique, Ritchie, David W.
Publicado em 2010

KBDOCK 2013: a spatial classification of 3D protein domain family interactions

Por Ghoorah, Anisah W., Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W.
Publicado em 2014

A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions

Por Ghoorah, Anisah W., Devignes, Marie-Dominique, Alborzi, Seyed Ziaeddin, Smaïl-Tabbone, Malika, Ritchie, David W.
Publicado no Biology (Basel) (2015)

Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex

Por Bourquard, Thomas, Landomiel, Flavie, Reiter, Eric, Crépieux, Pascale, Ritchie, David W., Azé, Jérôme, Poupon, Anne
Publicado no Sci Rep (2015)

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversi...

Por Ferraresso, Serena, Kuhl, Heiner, Milan, Massimo, Ritchie, David W., Secombes, Christopher J., Reinhardt, Richard, Bargelloni, Luca
Publicado em 2009

Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds

Por Padhorny, Dzmitry, Kazennov, Andrey, Zerbe, Brandon S., Porter, Kathryn A., Xia, Bing, Mottarella, Scott E., Kholodov, Yaroslav, Ritchie, David W., Vajda, Sandor, Kozakov, Dima
Publicado no Proc Natl Acad Sci U S A (2016)

Blind Prediction of Interfacial Water Positions in CAPRI

Por Lensink, Marc F., Moal, Iain H., Bates, Paul A., Kastritis, Panagiotis L., Melquiond, Adrien S.J., Karaca, Ezgi, Schmitz, Christophe, van Dijk, Marc, Bonvin, Alexandre M.J.J., Eisenstein, Miriam, Jiménez-García, Brian, Grosdidier, Solène, Solernou, Albert, Pérez-Cano, Laura, Pallara, Chiara, Fernández-Recio, Juan, Xu, Jianqing, Muthu, Pravin, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Grudinin, Sergei, Derevyanko, Georgy, Mitchell, Julie C., Wieting, John, Kanamori, Eiji, Tsuchiya, Yuko, Murakami, Yoichi, Sarmiento, Joy, Standley, Daron M., Shirota, Matsuyuki, Kinoshita, Kengo, Nakamura, Haruki, Chavent, Matthieu, Ritchie, David W., Park, Hahnbeom, Ko, Junsu, Lee, Hasup, Seok, Chaok, Shen, Yang, Kozakov, Dima, Vajda, Sandor, Kundrotas, Petras J., Vakser, Ilya A., Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Buch, Idit, Farkash, Efrat, Wolfson, Haim J., Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Shen-You, Zou, Xiaoqin, Wojdyla, Justyna A., Kleanthous, Colin, Wodak, Shoshana J.
Publicado no Proteins (2013)

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado no Proteins (2016)