RNAstrand: reading direction of structured RNAs in multiple sequence alignments

par Reiche, Kristin, Stadler, Peter F
Publié 2007

The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis

par Schüttler, Andreas, Reiche, Kristin, Altenburger, Rolf, Busch, Wibke
Publié dans Toxicol Sci (2017)

Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering

par Will, Sebastian, Reiche, Kristin, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf
Publié 2007

Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved

par Nitsche, Anne, Rose, Dominic, Fasold, Mario, Reiche, Kristin, Stadler, Peter F.
Publié dans RNA (2015)

Deletion analysis of the 3′ long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer

par Tramontano, Andrea, Donath, Alexander, Bernhart, Stephan H., Reiche, Kristin, Böhmdorfer, Gudrun, Stadler, Peter F., Bachmair, Andreas
Publié 2011

uap: reproducible and robust HTS data analysis

par Kämpf, Christoph, Specht, Michael, Scholz, Alexander, Puppel, Sven-Holger, Doose, Gero, Reiche, Kristin, Schor, Jana, Hackermüller, Jörg
Publié dans BMC Bioinformatics (2019)

Computational RNomics of Drosophilids

par Hertel Jana, Reiche Kristin, Washietl Stefan, Hackermüller Jörg, Rose Dominic, Findeiß Sven, Stadler Peter F, Prohaska Sonja J
Publié 2007-11-01

Computational RNomics of Drosophilids

par Rose, Dominic, Hackermüller, Jörg, Washietl, Stefan, Reiche, Kristin, Hertel, Jana, Findeiß, Sven, Stadler, Peter F, Prohaska, Sonja J
Publié 2007

Map and model—moving from observation to prediction in toxicogenomics

par Schüttler, Andreas, Altenburger, Rolf, Ammar, Madeleine, Bader-Blukott, Marcella, Jakobs, Gianina, Knapp, Johanna, Krüger, Janet, Reiche, Kristin, Wu, Gi-Mick, Busch, Wibke
Publié dans Gigascience (2019)

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer

par Binder, Stefanie, Hösler, Nadine, Riedel, Diana, Zipfel, Ivonne, Buschmann, Tilo, Kämpf, Christoph, Reiche, Kristin, Burger, Renate, Gramatzki, Martin, Hackermüller, Jörg, Stadler, Peter F., Horn, Friedemann
Publié dans Sci Rep (2017)

Master and servant: LINC00152 – a STAT3-induced long noncoding RNA regulates STAT3 in a positive feedback in human multiple myeloma

par Binder, Stefanie, Zipfel, Ivonne, Friedrich, Maik, Riedel, Diana, Ende, Stefanie, Kämpf, Christoph, Wiedemann, Karolin, Buschmann, Tilo, Puppel, Sven-Holger, Reiche, Kristin, Stadler, Peter F., Horn, Friedemann
Publié dans BMC Med Genomics (2020)

Long Non-Coding RNAs Differentially Expressed between Normal versus Primary Breast Tumor Tissues Disclose Converse Changes to Breast Cancer-Related Protein-Coding Genes

par Reiche, Kristin, Kasack, Katharina, Schreiber, Stephan, Lüders, Torben, Due, Eldri U., Naume, Bjørn, Riis, Margit, Kristensen, Vessela N., Horn, Friedemann, Børresen-Dale, Anne-Lise, Hackermüller, Jörg, Baumbusch, Lars O.
Publié 2014

Deep sequencing and automated histochemistry of human tissue slice cultures improve their usability as preclinical model for cancer research

par Haehnel, Susann, Reiche, Kristin, Loeffler, Dennis, Horn, Andreas, Blumert, Conny, Puppel, Sven-Holger, Kaiser, Nicole, Rapp, Felicitas, Rade, Michael, Horn, Friedemann, Meixensberger, Juergen, Bechmann, Ingo, Gaunitz, Frank, Winter, Karsten
Publié dans Sci Rep (2019)

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

par Hackermüller, Jörg, Reiche, Kristin, Otto, Christian, Hösler, Nadine, Blumert, Conny, Brocke-Heidrich, Katja, Böhlig, Levin, Nitsche, Anne, Kasack, Katharina, Ahnert, Peter, Krupp, Wolfgang, Engeland, Kurt, Stadler, Peter F, Horn, Friedemann
Publié 2014

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci(†)

par Kirsten, Holger, Al-Hasani, Hoor, Holdt, Lesca, Gross, Arnd, Beutner, Frank, Krohn, Knut, Horn, Katrin, Ahnert, Peter, Burkhardt, Ralph, Reiche, Kristin, Hackermüller, Jörg, Löffler, Markus, Teupser, Daniel, Thiery, Joachim, Scholz, Markus
Publié dans Hum Mol Genet (2015)

Roquin targets mRNAs in a 3′-UTR-specific manner by different modes of regulation

par Essig, Katharina, Kronbeck, Nina, Guimaraes, Joao C., Lohs, Claudia, Schlundt, Andreas, Hoffmann, Anne, Behrens, Gesine, Brenner, Sven, Kowalska, Joanna, Lopez-Rodriguez, Cristina, Jemielity, Jacek, Holtmann, Helmut, Reiche, Kristin, Hackermüller, Jörg, Sattler, Michael, Zavolan, Mihaela, Heissmeyer, Vigo
Publié dans Nat Commun (2018)

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA

par Rehage, Nina, Davydova, Elena, Conrad, Christine, Behrens, Gesine, Maiser, Andreas, Stehklein, Jenny E., Brenner, Sven, Klein, Juliane, Jeridi, Aicha, Hoffmann, Anne, Lee, Eunhae, Dianzani, Umberto, Willemsen, Rob, Feederle, Regina, Reiche, Kristin, Hackermüller, Jörg, Leonhardt, Heinrich, Sharma, Sonia, Niessing, Dierk, Heissmeyer, Vigo
Publié dans Nat Commun (2018)

Structured RNAs in the ENCODE selected regions of the human genome

par Washietl, Stefan, Pedersen, Jakob S., Korbel, Jan O., Stocsits, Claudia, Gruber, Andreas R., Hackermüller, Jörg, Hertel, Jana, Lindemeyer, Manja, Reiche, Kristin, Tanzer, Andrea, Ucla, Catherine, Wyss, Carine, Antonarakis, Stylianos E., Denoeud, France, Lagarde, Julien, Drenkow, Jorg, Kapranov, Philipp, Gingeras, Thomas R., Guigó, Roderic, Snyder, Michael, Gerstein, Mark B., Reymond, Alexandre, Hofacker, Ivo L., Stadler, Peter F.
Publié 2007

Low Energy Electron Irradiation Is a Potent Alternative to Gamma Irradiation for the Inactivation of (CAR-)NK-92 Cells in ATMP Manufacturing

par Walcher, Lia, Kistenmacher, Ann-Kathrin, Sommer, Charline, Böhlen, Sebastian, Ziemann, Christina, Dehmel, Susann, Braun, Armin, Tretbar, Uta Sandy, Klöß, Stephan, Schambach, Axel, Morgan, Michael, Löffler, Dennis, Kämpf, Christoph, Blumert, Conny, Reiche, Kristin, Beckmann, Jana, König, Ulla, Standfest, Bastian, Thoma, Martin, Makert, Gustavo R., Ulbert, Sebastian, Kossatz-Böhlert, Uta, Köhl, Ulrike, Dünkel, Anna, Fricke, Stephan
Publié dans Front Immunol (2021)

The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer

par Friedrich, Maik, Wiedemann, Karolin, Reiche, Kristin, Puppel, Sven-Holger, Pfeifer, Gabriele, Zipfel, Ivonne, Binder, Stefanie, Köhl, Ulrike, Müller, Gerd A., Engeland, Kurt, Aigner, Achim, Füssel, Susanne, Fröhner, Michael, Peitzsch, Claudia, Dubrovska, Anna, Rade, Michael, Christ, Sabina, Schreiber, Stephan, Hackermüller, Jörg, Lehmann, Jörg, Toma, Marieta I., Muders, Michael H., Sommer, Ulrich, Baretton, Gustavo B., Wirth, Manfred, Horn, Friedemann
Publié dans Cancers (Basel) (2020)