Salvaging Affymetrix probes after probe-level re-annotation

Por de Leeuw, Wim C, Rauwerda, Han, Jonker, Martijs J, Breit, Timo M
Publicado em 2008

SigWinR; the SigWin-detector updated and ported to R

Por Breit Timo M, Bruning Oskar, Inda Márcia A, Rauwerda Han, de Leeuw Wim C
Publicado em 2009-10-01

SigWinR; the SigWin-detector updated and ported to R

Por de Leeuw, Wim C, Rauwerda, Han, Inda, Márcia A, Bruning, Oskar, Breit, Timo M
Publicado em 2009

RNA isolation method for single embryo transcriptome analysis in zebrafish

Por Spaink Herman P, Verkooijen Jurgo, Bruning Oskar, Rauwerda Han, de Jong Mark, Breit Timo M
Publicado em 2010-03-01

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

Por de Leeuw Wim C, de Jong Mark, Rauwerda Han, Spaink Herman P, Breit Timo M
Publicado em 2010-07-01

RNA isolation method for single embryo transcriptome analysis in zebrafish

Por de Jong, Mark, Rauwerda, Han, Bruning, Oskar, Verkooijen, Jurgo, Spaink, Herman P, Breit, Timo M
Publicado em 2010

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

Por Rauwerda, Han, de Jong, Mark, de Leeuw, Wim C, Spaink, Herman P, Breit, Timo M
Publicado em 2010

OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity

Por Neerincx, Pieter BT, Rauwerda, Han, Nie, Haisheng, Groenen, Martien AM, Breit, Timo M, Leunissen, Jack AM
Publicado em 2009

Analysis of Temporal Gene Expression during Bacillus subtilis Spore Germination and Outgrowth

Por Keijser, Bart J. F., Ter Beek, Alex, Rauwerda, Han, Schuren, Frank, Montijn, Roy, van der Spek, Hans, Brul, Stanley
Publicado em 2007

Using R in Taverna: RShell v1.2

Por Wassink, Ingo, Rauwerda, Han, Neerincx, Pieter BT, Vet, Paul E van der, Breit, Timo M, Leunissen, Jack AM, Nijholt, Anton
Publicado em 2009

Valuable lessons-learned in transcriptomics experimentation

Por Bruning, Oskar, Rauwerda, Han, Dekker, Rob J, de Leeuw, Wim C, Wackers, Paul F K, Ensink, Wim A, Jonker, Martijs J, Breit, Timo M
Publicado no Transcription (2015)

Serious complications in gene-expression studies with stress perturbation: An example of UV-exposed p53-mutant mouse embryonic fibroblasts

Por Bruning, Oskar, Yuan, Xiaolian, Rodenburg, Wendy, Bruins, Wendy, van Oostrom, Conny T, Rauwerda, Han, Wittink, Floyd RA, Jonker, Martijs J, de Vries, Annemieke, Breit, Timo M
Publicado em 2010

Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs

Por Rauwerda, Han, Wackers, Paul, Pagano, Johanna F. B., de Jong, Mark, Ensink, Wim, Dekker, Rob, Nehrdich, Ulrike, Spaink, Herman P., Jonker, Martijs, Breit, Timo M.
Publicado no PLoS One (2016)

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos

Por Rauwerda, Han, Pagano, Johanna F. B., de Leeuw, Wim C., Ensink, Wim, Nehrdich, Ulrike, de Jong, Mark, Jonker, Martijs, Spaink, Herman P., Breit, Timo M.
Publicado no BMC Genomics (2017)

The Absence of Ser389 Phosphorylation in p53 Affects the Basal Gene Expression Level of Many p53-Dependent Genes and Alters the Biphasic Response to UV Exposure in Mouse Embryonic...

Por Bruins, Wendy, Bruning, Oskar, Jonker, Martijs J., Zwart, Edwin, van der Hoeven, Tessa V., Pennings, Jeroen L. A., Rauwerda, Han, de Vries, Annemieke, Breit, Timo M.
Publicado em 2008

A Range Finding Protocol to Support Design for Transcriptomics Experimentation: Examples of In-Vitro and In-Vivo Murine UV Exposure

Por Bruning, Oskar, Rodenburg, Wendy, van Oostrom, Conny T., Jonker, Martijs J., de Jong, Mark, Dekker, Rob J., Rauwerda, Han, Ensink, Wim A., de Vries, Annemieke, Breit, Timo M.
Publicado em 2014

Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment

Por Bruning, Oskar, Rodenburg, Wendy, Wackers, Paul F. K., van Oostrom, Conny, Jonker, Martijs J., Dekker, Rob J., Rauwerda, Han, Ensink, Wim A., de Vries, Annemieke, Breit, Timo M.
Publicado no PLoS One (2016)

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers()

Por Pagano, Johanna F.B., Rauwerda, Han, de Leeuw, Wim C., Wackers, Paul, de Jong, Mark, Ensink, Wim, Dekker, Rob, Nehrdich, Ulrike, Spaink, Herman P., Jonker, Martijs, Breit, Timo M.
Publicado no Data Brief (2016)

Absence/presence calling in microarray-based CGH experiments with non-model organisms

Por Jonker, Martijs J., de Leeuw, Wim C., Marinković, Marino, Wittink, Floyd R. A., Rauwerda, Han, Bruning, Oskar, Ensink, Wim A., Fluit, Ad C., Boel, C. H., de Jong, Mark, Breit, Timo M.
Publicado em 2014

Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization

Por Locati, Mauro D., Terpstra, Inez, de Leeuw, Wim C., Kuzak, Mateusz, Rauwerda, Han, Ensink, Wim A., van Leeuwen, Selina, Nehrdich, Ulrike, Spaink, Herman P., Jonker, Martijs J., Breit, Timo M., Dekker, Rob J.
Publicado no Nucleic Acids Res (2015)