BEDTools: the Swiss-army tool for genome feature analysis

Por Quinlan, Aaron R.
Publicado em 2014

Who’s Who? Detecting and Resolving Sample Anomalies in Human DNA Sequencing Studies with Peddy

Por Pedersen, Brent S., Quinlan, Aaron R.
Publicado no Am J Hum Genet (2017)

cyvcf2: fast, flexible variant analysis with Python

Por Pedersen, Brent S, Quinlan, Aaron R
Publicado no Bioinformatics (2017)

Mosdepth: quick coverage calculation for genomes and exomes

Por Pedersen, Brent S, Quinlan, Aaron R
Publicado no Bioinformatics (2018)

BEDTools: a flexible suite of utilities for comparing genomic features

Por Quinlan, Aaron R., Hall, Ira M.
Publicado em 2010

Characterizing complex structural variation in germline and somatic genomes

Por Quinlan, Aaron R., Hall, Ira M.
Publicado em 2011

Poretools: a toolkit for analyzing nanopore sequence data

Por Loman, Nicholas J., Quinlan, Aaron R.
Publicado no Bioinformatics (2014)

Settling the score: variant prioritization and Mendelian disease

Por Eilbeck, Karen, Quinlan, Aaron, Yandell, Mark
Publicado no Nat Rev Genet (2017)

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

Por Dale, Ryan K., Pedersen, Brent S., Quinlan, Aaron R.
Publicado em 2011

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Por Quick, Joshua, Quinlan, Aaron R, Loman, Nicholas J
Publicado no Gigascience (2014)

Erratum: A reference bacterial genome dataset generated on the MinION(TM) portable single-molecule nanopore sequencer

Por Quick, Joshua, Quinlan, Aaron R, Loman, Nicholas J
Publicado no Gigascience (2015)

Vcfanno: fast, flexible annotation of genetic variants

Por Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.
Publicado no Genome Biol (2016)

Population-based structural variation discovery with Hydra-Multi

Por Lindberg, Michael R., Hall, Ira M., Quinlan, Aaron R.
Publicado no Bioinformatics (2015)

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations

Por Paila, Umadevi, Chapman, Brad A., Kirchner, Rory, Quinlan, Aaron R.
Publicado em 2013

Cas9-chromatin binding information enables more accurate CRISPR off-target prediction

Por Singh, Ritambhara, Kuscu, Cem, Quinlan, Aaron, Qi, Yanjun, Adli, Mazhar
Publicado no Nucleic Acids Res (2015)

LUMPY: a probabilistic framework for structural variant discovery

Por Layer, Ryan M, Chiang, Colby, Quinlan, Aaron R, Hall, Ira M
Publicado em 2014

Efficient genotype compression and analysis of large genetic variation datasets

Por Layer, Ryan M., Kindlon, Neil, Karczewski, Konrad J., Quinlan, Aaron R.
Publicado no Nat Methods (2015)

Indexcov: fast coverage quality control for whole-genome sequencing

Por Pedersen, Brent S, Collins, Ryan L, Talkowski, Michael E, Quinlan, Aaron R
Publicado no Gigascience (2017)

Binary Interval Search: a scalable algorithm for counting interval intersections

Por Layer, Ryan M., Skadron, Kevin, Robins, Gabriel, Hall, Ira M., Quinlan, Aaron R.
Publicado em 2013

BamTools: a C++ API and toolkit for analyzing and managing BAM files

Por Barnett, Derek W., Garrison, Erik K., Quinlan, Aaron R., Strömberg, Michael P., Marth, Gabor T.
Publicado em 2011