A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation

Por Trachana, Kalliopi, Forslund, Kristoffer, Larsson, Tomas, Powell, Sean, Doerks, Tobias, von Mering, Christian, Bork, Peer
Publicado no PLoS One (2014)

Orthology prediction methods: A quality assessment using curated protein families

Por Trachana, Kalliopi, Larsson, Tomas A, Powell, Sean, Chen, Wei-Hua, Doerks, Tobias, Muller, Jean, Bork, Peer
Publicado em 2011

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Por Powell, Sean, Szklarczyk, Damian, Trachana, Kalliopi, Roth, Alexander, Kuhn, Michael, Muller, Jean, Arnold, Roland, Rattei, Thomas, Letunic, Ivica, Doerks, Tobias, Jensen, Lars J., von Mering, Christian, Bork, Peer
Publicado em 2012

eggNOG v4.0: nested orthology inference across 3686 organisms

Por Powell, Sean, Forslund, Kristoffer, Szklarczyk, Damian, Trachana, Kalliopi, Roth, Alexander, Huerta-Cepas, Jaime, Gabaldón, Toni, Rattei, Thomas, Creevey, Chris, Kuhn, Michael, Jensen, Lars J., von Mering, Christian, Bork, Peer
Publicado em 2014

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

Por Bock, Thomas, Chen, Wei-Hua, Ori, Alessandro, Malik, Nayab, Silva-Martin, Noella, Huerta-Cepas, Jaime, Powell, Sean T., Kastritis, Panagiotis L., Smyshlyaev, Georgy, Vonkova, Ivana, Kirkpatrick, Joanna, Doerks, Tobias, Nesme, Leo, Baßler, Jochen, Kos, Martin, Hurt, Ed, Carlomagno, Teresa, Gavin, Anne-Claude, Barabas, Orsolya, Müller, Christoph W., van Noort, Vera, Beck, Martin, Bork, Peer
Publicado no Nucleic Acids Res (2014)