An Experimental Verification of the Predicted Effects of Promoter TATA-Box Polymorphisms Associated with Human Diseases on Interactions between the TATA Boxes and TATA-Binding Prot...

Por Savinkova, Ludmila, Drachkova, Irina, Arshinova, Tatyana, Ponomarenko, Petr, Ponomarenko, Mikhail, Kolchanov, Nikolay
Publicado em 2013

SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data

Por Ponomarenko, Julia V., Orlova, Galina V., Frolov, Anatoly S., Gelfand, Mikhail S., Ponomarenko, Mikhail P.
Publicado em 2002

Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene P...

Por Ponomarenko, Mikhail P., Arkova, Olga, Rasskazov, Dmitry, Ponomarenko, Petr, Savinkova, Ludmila, Kolchanov, Nikolay
Publicado no Front Immunol (2016)

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro

Por Valuev, Vadim P., Afonnikov, Dmitry A., Ponomarenko, Mikhail P., Milanesi, Luciano, Kolchanov, Nikolay A.
Publicado em 2002

How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Pro...

Por Ponomarenko, Mikhail, Rasskazov, Dmitry, Arkova, Olga, Ponomarenko, Petr, Suslov, Valentin, Savinkova, Ludmila, Kolchanov, Nikolay
Publicado no Biomed Res Int (2015)

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation

Por Ponomarenko, Julia V., Orlova, Galina V., Ponomarenko, Mikhail P., Lavryushev, Sergey V., Frolov, Anatoly S., Zybova, Svetlana V., Kolchanov, Nikolay A.
Publicado em 2000

Abundances of microRNAs in human cells can be estimated as a function of the abundances of YRHB and RHHK tetranucleotides in these microRNAs as an ill-posed inverse problem solutio...

Por Ponomarenko, Mikhail P., Suslov, Valentin V., Ponomarenko, Petr M., Gunbin, Konstantin V., Stepanenko, Irina L., Vishnevsky, Oleg V., Kolchanov, Nikolay A.
Publicado em 2013

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another

Por Ponomarenko, Julia V., Furman, Dagmara P., Frolov, Anatoly S., Podkolodny, Nikolay L., Orlova, Galina V., Ponomarenko, Mikhail P., Kolchanov, Nikolay A., Sarai, Akinori
Publicado em 2001

rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation

Por Ponomarenko, Julia V., Merkulova, Tatyana I., Orlova, Galina V., Fokin, Oleg N., Gorshkova, Elena V., Frolov, Anatoly S., Valuev, Vadim P., Ponomarenko, Mikhail P.
Publicado em 2003

Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters

Por Arkova, Olga V, Ponomarenko, Mikhail P, Rasskazov, Dmitry A, Drachkova, Irina A, Arshinova, Tatjana V, Ponomarenko, Petr M, Savinkova, Ludmila K, Kolchanov, Nikolay A
Publicado no BMC Genomics (2015)

Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters

Por Ponomarenko, Petr, Rasskazov, Dmitry, Suslov, Valentin, Sharypova, Ekaterina, Savinkova, Ludmila, Podkolodnaya, Olga, Podkolodny, Nikolay L., Tverdokhleb, Natalya N., Chadaeva, Irina, Ponomarenko, Mikhail, Kolchanov, Nikolay
Publicado no Biomed Res Int (2016)

Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters

Por Ponomarenko, Petr, Chadaeva, Irina, Rasskazov, Dmitry A., Sharypova, Ekaterina, Kashina, Elena V., Drachkova, Irina, Zhechev, Dmitry, Ponomarenko, Mikhail P., Savinkova, Ludmila K., Kolchanov, Nikolay
Publicado no Front Aging Neurosci (2017)

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations

Por Ponomarenko, Julia V., Merkulova, Tatyana I., Vasiliev, Gennady V., Levashova, Zoya B., Orlova, Galina V., Lavryushev, Sergey V., Fokin, Oleg N., Ponomarenko, Mikhail P., Frolov, Anatoly S., Sarai, Akinori
Publicado em 2001

Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding protein fo...

Por Chadaeva, Irina V., Ponomarenko, Mikhail P., Rasskazov, Dmitry A., Sharypova, Ekaterina B., Kashina, Elena V., Matveeva, Marina Yu, Arshinova, Tatjana V., Ponomarenko, Petr M., Arkova, Olga V., Bondar, Natalia P., Savinkova, Ludmila K., Kolchanov, Nikolay A.
Publicado no BMC Genomics (2016)