Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models

по Nobile, Marco S., Coelho, Vasco, Pescini, Dario, Damiani, Chiara
Опубликовано в: BMC Bioinformatics (2021)

cuTauLeaping: A GPU-Powered Tau-Leaping Stochastic Simulator for Massive Parallel Analyses of Biological Systems

по Nobile, Marco S., Cazzaniga, Paolo, Besozzi, Daniela, Pescini, Dario, Mauri, Giancarlo
Опубликовано 2014

The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae

по Besozzi, Daniela, Cazzaniga, Paolo, Pescini, Dario, Mauri, Giancarlo, Colombo, Sonia, Martegani, Enzo
Опубликовано 2012

Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes

по Colombo, Riccardo, Damiani, Chiara, Gilbert, David, Heiner, Monika, Mauri, Giancarlo, Pescini, Dario
Опубликовано в: BMC Bioinformatics (2018)

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis

по Damiani, Chiara, Di Filippo, Marzia, Pescini, Dario, Maspero, Davide, Colombo, Riccardo, Mauri, Giancarlo
Опубликовано в: Bioinformatics (2017)

In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae

по Amara, Flavio, Colombo, Riccardo, Cazzaniga, Paolo, Pescini, Dario, Csikász-Nagy, Attila, Falconi, Marco Muzi, Besozzi, Daniela, Plevani, Paolo
Опубликовано 2013

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ...

по Damiani, Chiara, Colombo, Riccardo, Gaglio, Daniela, Mastroianni, Fabrizia, Pescini, Dario, Westerhoff, Hans Victor, Mauri, Giancarlo, Vanoni, Marco, Alberghina, Lilia
Опубликовано в: PLoS Comput Biol (2017)

MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy

по Damiani, Chiara, Rovida, Lorenzo, Maspero, Davide, Sala, Irene, Rosato, Luca, Di Filippo, Marzia, Pescini, Dario, Graudenzi, Alex, Antoniotti, Marco, Mauri, Giancarlo
Опубликовано в: Comput Struct Biotechnol J (2020)

Computational Strategies for a System-Level Understanding of Metabolism

по Cazzaniga, Paolo, Damiani, Chiara, Besozzi, Daniela, Colombo, Riccardo, Nobile, Marco S., Gaglio, Daniela, Pescini, Dario, Molinari, Sara, Mauri, Giancarlo, Alberghina, Lilia, Vanoni, Marco
Опубликовано в: Metabolites (2014)

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

по Damiani, Chiara, Maspero, Davide, Di Filippo, Marzia, Colombo, Riccardo, Pescini, Dario, Graudenzi, Alex, Westerhoff, Hans Victor, Alberghina, Lilia, Vanoni, Marco, Mauri, Giancarlo
Опубликовано в: PLoS Comput Biol (2019)