Quantized correlation coefficient for measuring reproducibility of ChIP-chip data

по Peng, Shouyong, Kuroda, Mitzi I, Park, Peter J
Опубликовано 2010

Normalization and experimental design for ChIP-chip data

по Alekseyenko Artyom A, Peng Shouyong, Larschan Erica, Kuroda Mitzi I, Park Peter J
Опубликовано 2007-06-01

Normalization and experimental design for ChIP-chip data

по Peng, Shouyong, Alekseyenko, Artyom A, Larschan, Erica, Kuroda, Mitzi I, Park, Peter J
Опубликовано 2007

Drosophila MSL complex globally acetylates H4 Lys16 on the male X chromosome for dosage compensation

по Gelbart, Marnie E., Larschan, Erica, Peng, Shouyong, Park, Peter J., Kuroda, Mitzi I.
Опубликовано 2009

p53 prevents neurodegeneration by regulating synaptic genes

по Merlo, Paola, Frost, Bess, Peng, Shouyong, Yang, Yawei J., Park, Peter J., Feany, Mel
Опубликовано в: Proc Natl Acad Sci U S A (2014)

The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila X chromosome

по Sural, Tuba H., Peng, Shouyong, Li, Bing, Workman, Jerry L., Park, Peter J., Kuroda, Mitzi I.
Опубликовано 2008

Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

по Seiler, Michael, Peng, Shouyong, Agrawal, Anant A., Palacino, James, Teng, Teng, Zhu, Ping, Smith, Peter G., Buonamici, Silvia, Yu, Lihua
Опубликовано в: Cell Rep (2018)

SOX15 Governs Transcription in Human Stratified Epithelia and a Subset of Esophageal Adenocarcinomas

по Sulahian, Rita, Chen, Justina, Arany, Zoltan, Jadhav, Unmesh, Peng, Shouyong, Rustgi, Anil K., Bass, Adam J., Srivastava, Amitabh, Hornick, Jason L., Shivdasani, Ramesh A.
Опубликовано в: Cell Mol Gastroenterol Hepatol (2015)

Identification of Chromatin-Associated Regulators of MSL Complex Targeting in Drosophila Dosage Compensation

по Larschan, Erica, Soruco, Marcela M. L., Lee, Ok-Kyung, Peng, Shouyong, Bishop, Eric, Chery, Jessica, Goebel, Karen, Feng, Jessica, Park, Peter J., Kuroda, Mitzi I.
Опубликовано 2012

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila

по Alekseyenko, Artyom A., Ellison, Christopher E., Gorchakov, Andrey A., Zhou, Qi, Kaiser, Vera B., Toda, Nick, Walton, Zaak, Peng, Shouyong, Park, Peter J., Bachtrog, Doris, Kuroda, Mitzi I.
Опубликовано 2013

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients

по Schumacher, Steven E., Shim, Byoung Yong, Corso, Giovanni, Ryu, Min-Hee, Kang, Yoon-Koo, Roviello, Franco, Saksena, Gordon, Peng, Shouyong, Shivdasani, Ramesh A., Bass, Adam J., Beroukhim, Rameen
Опубликовано в: PLoS One (2017)

Mutant N-Ras protects colorectal cancer cells from stress-induced apoptosis and contributes to cancer development and progression

по Wang, Yufang, Velho, Sérgia, Vakiani, Efsevia, Peng, Shouyong, Bass, Adam J., Chu, Gerald C., Gierut, Jessica, Bugni, James M., Der, Channing J., Philips, Mark, Solit, David B., Haigis, Kevin M.
Опубликовано 2012

Src Mutation Induces Acquired Lapatinib Resistance in ERBB2-Amplified Human Gastroesophageal Adenocarcinoma Models

по Hong, Yong Sang, Kim, Jihun, Pectasides, Eirini, Fox, Cameron, Hong, Seung-Woo, Ma, Qiuping, Wong, Gabrielle S., Peng, Shouyong, Stachler, Matthew D., Thorner, Aaron R., Van Hummelen, Paul, Bass, Adam J.
Опубликовано 2014

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome

по Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Опубликовано 2008

Analyses of clinicopathological, molecular, and prognostic associations of KRAS codon 61 and codon 146 mutations in colorectal cancer: cohort study and literature review

по Imamura, Yu, Lochhead, Paul, Yamauchi, Mai, Kuchiba, Aya, Qian, Zhi Rong, Liao, Xiaoyun, Nishihara, Reiko, Jung, Seungyoun, Wu, Kana, Nosho, Katsuhiko, Wang, Yaoyu E, Peng, Shouyong, Bass, Adam J, Haigis, Kevin M, Meyerhardt, Jeffrey A, Chan, Andrew T, Fuchs, Charles S, Ogino, Shuji
Опубликовано 2014

Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target

по Watanabe, Hideo, Francis, Joshua M., Woo, Michele S., Etemad, Banafsheh, Lin, Wenchu, Fries, Daniel F., Peng, Shouyong, Snyder, Eric L., Tata, Purushothama Rao, Izzo, Francesca, Schinzel, Anna C., Cho, Jeonghee, Hammerman, Peter S., Verhaak, Roel G., Hahn, William C., Rajagopal, Jayaraj, Jacks, Tyler, Meyerson, Matthew
Опубликовано 2013

Preexisting oncogenic events impact trastuzumab sensitivity in ERBB2-amplified gastroesophageal adenocarcinoma

по Kim, Jihun, Fox, Cameron, Peng, Shouyong, Pusung, Mark, Pectasides, Eirini, Matthee, Eric, Hong, Yong Sang, Do, In-Gu, Jang, Jiryeon, Thorner, Aaron R., Van Hummelen, Paul, Rustgi, Anil K., Wong, Kwok-Kin, Zhou, Zhongren, Tang, Ping, Kim, Kyoung-Mee, Lee, Jeeyun, Bass, Adam J.
Опубликовано в: J Clin Invest (2014)

SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas

по Watanabe, Hideo, Ma, Qiuping, Peng, Shouyong, Adelmant, Guillaume, Swain, Danielle, Song, Wenyu, Fox, Cameron, Francis, Joshua M., Pedamallu, Chandra Sekhar, DeLuca, David S., Brooks, Angela N., Wang, Su, Que, Jianwen, Rustgi, Anil K., Wong, Kwok-kin, Ligon, Keith L., Liu, X. Shirley, Marto, Jarrod A., Meyerson, Matthew, Bass, Adam J.
Опубликовано 2014

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

по Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Опубликовано 2012

Correction: Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

по Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Опубликовано 2014