Quantized correlation coefficient for measuring reproducibility of ChIP-chip data

door Peng, Shouyong, Kuroda, Mitzi I, Park, Peter J
Gepubliceerd in 2010

Normalization and experimental design for ChIP-chip data

door Alekseyenko Artyom A, Peng Shouyong, Larschan Erica, Kuroda Mitzi I, Park Peter J
Gepubliceerd in 2007-06-01

Normalization and experimental design for ChIP-chip data

door Peng, Shouyong, Alekseyenko, Artyom A, Larschan, Erica, Kuroda, Mitzi I, Park, Peter J
Gepubliceerd in 2007

Drosophila MSL complex globally acetylates H4 Lys16 on the male X chromosome for dosage compensation

door Gelbart, Marnie E., Larschan, Erica, Peng, Shouyong, Park, Peter J., Kuroda, Mitzi I.
Gepubliceerd in 2009

p53 prevents neurodegeneration by regulating synaptic genes

door Merlo, Paola, Frost, Bess, Peng, Shouyong, Yang, Yawei J., Park, Peter J., Feany, Mel
Gepubliceerd in Proc Natl Acad Sci U S A (2014)

The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila X chromosome

door Sural, Tuba H., Peng, Shouyong, Li, Bing, Workman, Jerry L., Park, Peter J., Kuroda, Mitzi I.
Gepubliceerd in 2008

Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

door Seiler, Michael, Peng, Shouyong, Agrawal, Anant A., Palacino, James, Teng, Teng, Zhu, Ping, Smith, Peter G., Buonamici, Silvia, Yu, Lihua
Gepubliceerd in Cell Rep (2018)

SOX15 Governs Transcription in Human Stratified Epithelia and a Subset of Esophageal Adenocarcinomas

door Sulahian, Rita, Chen, Justina, Arany, Zoltan, Jadhav, Unmesh, Peng, Shouyong, Rustgi, Anil K., Bass, Adam J., Srivastava, Amitabh, Hornick, Jason L., Shivdasani, Ramesh A.
Gepubliceerd in Cell Mol Gastroenterol Hepatol (2015)

Identification of Chromatin-Associated Regulators of MSL Complex Targeting in Drosophila Dosage Compensation

door Larschan, Erica, Soruco, Marcela M. L., Lee, Ok-Kyung, Peng, Shouyong, Bishop, Eric, Chery, Jessica, Goebel, Karen, Feng, Jessica, Park, Peter J., Kuroda, Mitzi I.
Gepubliceerd in 2012

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila

door Alekseyenko, Artyom A., Ellison, Christopher E., Gorchakov, Andrey A., Zhou, Qi, Kaiser, Vera B., Toda, Nick, Walton, Zaak, Peng, Shouyong, Park, Peter J., Bachtrog, Doris, Kuroda, Mitzi I.
Gepubliceerd in 2013

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients

door Schumacher, Steven E., Shim, Byoung Yong, Corso, Giovanni, Ryu, Min-Hee, Kang, Yoon-Koo, Roviello, Franco, Saksena, Gordon, Peng, Shouyong, Shivdasani, Ramesh A., Bass, Adam J., Beroukhim, Rameen
Gepubliceerd in PLoS One (2017)

Mutant N-Ras protects colorectal cancer cells from stress-induced apoptosis and contributes to cancer development and progression

door Wang, Yufang, Velho, Sérgia, Vakiani, Efsevia, Peng, Shouyong, Bass, Adam J., Chu, Gerald C., Gierut, Jessica, Bugni, James M., Der, Channing J., Philips, Mark, Solit, David B., Haigis, Kevin M.
Gepubliceerd in 2012

Src Mutation Induces Acquired Lapatinib Resistance in ERBB2-Amplified Human Gastroesophageal Adenocarcinoma Models

door Hong, Yong Sang, Kim, Jihun, Pectasides, Eirini, Fox, Cameron, Hong, Seung-Woo, Ma, Qiuping, Wong, Gabrielle S., Peng, Shouyong, Stachler, Matthew D., Thorner, Aaron R., Van Hummelen, Paul, Bass, Adam J.
Gepubliceerd in 2014

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome

door Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Gepubliceerd in 2008

Analyses of clinicopathological, molecular, and prognostic associations of KRAS codon 61 and codon 146 mutations in colorectal cancer: cohort study and literature review

door Imamura, Yu, Lochhead, Paul, Yamauchi, Mai, Kuchiba, Aya, Qian, Zhi Rong, Liao, Xiaoyun, Nishihara, Reiko, Jung, Seungyoun, Wu, Kana, Nosho, Katsuhiko, Wang, Yaoyu E, Peng, Shouyong, Bass, Adam J, Haigis, Kevin M, Meyerhardt, Jeffrey A, Chan, Andrew T, Fuchs, Charles S, Ogino, Shuji
Gepubliceerd in 2014

Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target

door Watanabe, Hideo, Francis, Joshua M., Woo, Michele S., Etemad, Banafsheh, Lin, Wenchu, Fries, Daniel F., Peng, Shouyong, Snyder, Eric L., Tata, Purushothama Rao, Izzo, Francesca, Schinzel, Anna C., Cho, Jeonghee, Hammerman, Peter S., Verhaak, Roel G., Hahn, William C., Rajagopal, Jayaraj, Jacks, Tyler, Meyerson, Matthew
Gepubliceerd in 2013

Preexisting oncogenic events impact trastuzumab sensitivity in ERBB2-amplified gastroesophageal adenocarcinoma

door Kim, Jihun, Fox, Cameron, Peng, Shouyong, Pusung, Mark, Pectasides, Eirini, Matthee, Eric, Hong, Yong Sang, Do, In-Gu, Jang, Jiryeon, Thorner, Aaron R., Van Hummelen, Paul, Rustgi, Anil K., Wong, Kwok-Kin, Zhou, Zhongren, Tang, Ping, Kim, Kyoung-Mee, Lee, Jeeyun, Bass, Adam J.
Gepubliceerd in J Clin Invest (2014)

SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas

door Watanabe, Hideo, Ma, Qiuping, Peng, Shouyong, Adelmant, Guillaume, Swain, Danielle, Song, Wenyu, Fox, Cameron, Francis, Joshua M., Pedamallu, Chandra Sekhar, DeLuca, David S., Brooks, Angela N., Wang, Su, Que, Jianwen, Rustgi, Anil K., Wong, Kwok-kin, Ligon, Keith L., Liu, X. Shirley, Marto, Jarrod A., Meyerson, Matthew, Bass, Adam J.
Gepubliceerd in 2014

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

door Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Gepubliceerd in 2012

Correction: Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

door Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Gepubliceerd in 2014