Quantized correlation coefficient for measuring reproducibility of ChIP-chip data

by Peng, Shouyong, Kuroda, Mitzi I, Park, Peter J
Published 2010

Normalization and experimental design for ChIP-chip data

by Alekseyenko Artyom A, Peng Shouyong, Larschan Erica, Kuroda Mitzi I, Park Peter J
Published 2007-06-01

Normalization and experimental design for ChIP-chip data

by Peng, Shouyong, Alekseyenko, Artyom A, Larschan, Erica, Kuroda, Mitzi I, Park, Peter J
Published 2007

Drosophila MSL complex globally acetylates H4 Lys16 on the male X chromosome for dosage compensation

by Gelbart, Marnie E., Larschan, Erica, Peng, Shouyong, Park, Peter J., Kuroda, Mitzi I.
Published 2009

p53 prevents neurodegeneration by regulating synaptic genes

by Merlo, Paola, Frost, Bess, Peng, Shouyong, Yang, Yawei J., Park, Peter J., Feany, Mel
Published in Proc Natl Acad Sci U S A (2014)

The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila X chromosome

by Sural, Tuba H., Peng, Shouyong, Li, Bing, Workman, Jerry L., Park, Peter J., Kuroda, Mitzi I.
Published 2008

Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

by Seiler, Michael, Peng, Shouyong, Agrawal, Anant A., Palacino, James, Teng, Teng, Zhu, Ping, Smith, Peter G., Buonamici, Silvia, Yu, Lihua
Published in Cell Rep (2018)

SOX15 Governs Transcription in Human Stratified Epithelia and a Subset of Esophageal Adenocarcinomas

by Sulahian, Rita, Chen, Justina, Arany, Zoltan, Jadhav, Unmesh, Peng, Shouyong, Rustgi, Anil K., Bass, Adam J., Srivastava, Amitabh, Hornick, Jason L., Shivdasani, Ramesh A.
Published in Cell Mol Gastroenterol Hepatol (2015)

Identification of Chromatin-Associated Regulators of MSL Complex Targeting in Drosophila Dosage Compensation

by Larschan, Erica, Soruco, Marcela M. L., Lee, Ok-Kyung, Peng, Shouyong, Bishop, Eric, Chery, Jessica, Goebel, Karen, Feng, Jessica, Park, Peter J., Kuroda, Mitzi I.
Published 2012

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila

by Alekseyenko, Artyom A., Ellison, Christopher E., Gorchakov, Andrey A., Zhou, Qi, Kaiser, Vera B., Toda, Nick, Walton, Zaak, Peng, Shouyong, Park, Peter J., Bachtrog, Doris, Kuroda, Mitzi I.
Published 2013

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients

by Schumacher, Steven E., Shim, Byoung Yong, Corso, Giovanni, Ryu, Min-Hee, Kang, Yoon-Koo, Roviello, Franco, Saksena, Gordon, Peng, Shouyong, Shivdasani, Ramesh A., Bass, Adam J., Beroukhim, Rameen
Published in PLoS One (2017)

Mutant N-Ras protects colorectal cancer cells from stress-induced apoptosis and contributes to cancer development and progression

by Wang, Yufang, Velho, Sérgia, Vakiani, Efsevia, Peng, Shouyong, Bass, Adam J., Chu, Gerald C., Gierut, Jessica, Bugni, James M., Der, Channing J., Philips, Mark, Solit, David B., Haigis, Kevin M.
Published 2012

Src Mutation Induces Acquired Lapatinib Resistance in ERBB2-Amplified Human Gastroesophageal Adenocarcinoma Models

by Hong, Yong Sang, Kim, Jihun, Pectasides, Eirini, Fox, Cameron, Hong, Seung-Woo, Ma, Qiuping, Wong, Gabrielle S., Peng, Shouyong, Stachler, Matthew D., Thorner, Aaron R., Van Hummelen, Paul, Bass, Adam J.
Published 2014

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome

by Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Published 2008

Analyses of clinicopathological, molecular, and prognostic associations of KRAS codon 61 and codon 146 mutations in colorectal cancer: cohort study and literature review

by Imamura, Yu, Lochhead, Paul, Yamauchi, Mai, Kuchiba, Aya, Qian, Zhi Rong, Liao, Xiaoyun, Nishihara, Reiko, Jung, Seungyoun, Wu, Kana, Nosho, Katsuhiko, Wang, Yaoyu E, Peng, Shouyong, Bass, Adam J, Haigis, Kevin M, Meyerhardt, Jeffrey A, Chan, Andrew T, Fuchs, Charles S, Ogino, Shuji
Published 2014

Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target

by Watanabe, Hideo, Francis, Joshua M., Woo, Michele S., Etemad, Banafsheh, Lin, Wenchu, Fries, Daniel F., Peng, Shouyong, Snyder, Eric L., Tata, Purushothama Rao, Izzo, Francesca, Schinzel, Anna C., Cho, Jeonghee, Hammerman, Peter S., Verhaak, Roel G., Hahn, William C., Rajagopal, Jayaraj, Jacks, Tyler, Meyerson, Matthew
Published 2013

Preexisting oncogenic events impact trastuzumab sensitivity in ERBB2-amplified gastroesophageal adenocarcinoma

by Kim, Jihun, Fox, Cameron, Peng, Shouyong, Pusung, Mark, Pectasides, Eirini, Matthee, Eric, Hong, Yong Sang, Do, In-Gu, Jang, Jiryeon, Thorner, Aaron R., Van Hummelen, Paul, Rustgi, Anil K., Wong, Kwok-Kin, Zhou, Zhongren, Tang, Ping, Kim, Kyoung-Mee, Lee, Jeeyun, Bass, Adam J.
Published in J Clin Invest (2014)

SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas

by Watanabe, Hideo, Ma, Qiuping, Peng, Shouyong, Adelmant, Guillaume, Swain, Danielle, Song, Wenyu, Fox, Cameron, Francis, Joshua M., Pedamallu, Chandra Sekhar, DeLuca, David S., Brooks, Angela N., Wang, Su, Que, Jianwen, Rustgi, Anil K., Wong, Kwok-kin, Ligon, Keith L., Liu, X. Shirley, Marto, Jarrod A., Meyerson, Matthew, Bass, Adam J.
Published 2014

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

by Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Published 2012

Correction: Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

by Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Published 2014