Integration of expression data in genome-scale metabolic network reconstructions

由 Blazier, Anna S., Papin, Jason A.
出版 2012

Computing Biology

由 Nussinov, Ruth, Papin, Jason A.
發表在 PLoS Comput Biol (2016)

History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment

由 Yen, Phillip, Papin, Jason A.
發表在 PLoS Biol (2017)

How can computation advance microbiome research?

由 Nussinov, Ruth, Papin, Jason A.
發表在 PLoS Comput Biol (2017)

Reconciling high-throughput gene essentiality data with metabolic network reconstructions

由 Blazier, Anna S., Papin, Jason A.
發表在 PLoS Comput Biol (2019)

The JAK-STAT Signaling Network in the Human B-Cell: An Extreme Signaling Pathway Analysis

由 Papin, Jason A., Palsson, Bernhard O.
出版 2004

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

由 Biggs, Matthew B., Papin, Jason A.
出版 2013

MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data

由 Jensen, Paul A., Papin, Jason A.
出版 2014

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA

由 Biggs, Matthew B., Papin, Jason A.
發表在 PLoS Comput Biol (2017)

Ten simple rules for biologists learning to program

由 Carey, Maureen A., Papin, Jason A.
發表在 PLoS Comput Biol (2018)

Biomedical applications of genome-scale metabolic network reconstructions of human pathogens

由 Dunphy, Laura J., Papin, Jason A.
發表在 Curr Opin Biotechnol (2017)

Metabolic network-guided binning of metagenomic sequence fragments

由 Biggs, Matthew B., Papin, Jason A.
發表在 Bioinformatics (2016)

Functional integration of a metabolic network model and expression data without arbitrary thresholding

由 Jensen, Paul A., Papin, Jason A.
發表在 Bioinformatics (2011)

Wisdom of crowds in computational biology

由 Papin, Jason A., Mac Gabhann, Feilim
發表在 PLoS Comput Biol (2019)

Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

由 Medlock, Gregory L., Papin, Jason A.
發表在 Cell Syst (2020)

Computing the Dynamic Supramolecular Structural Proteome

由 Nussinov, Ruth, Papin, Jason A., Vakser, Ilya
發表在 PLoS Comput Biol (2017)

SIMPLE: A Sequential Immunoperoxidase Labeling and Erasing Method

由 Glass, George, Papin, Jason A., Mandell, James W.
出版 2009

Multiscale Computational Models of Complex Biological Systems

由 Walpole, Joseph, Papin, Jason A., Peirce, Shayn M.
出版 2013

Integrated experimental and computational analyses reveal differential metabolic functionality in antibiotic-resistant Pseudomonas aeruginosa

由 Dunphy, Laura J., Yen, Phillip, Papin, Jason A.
發表在 Cell Syst (2019)

Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

由 Price, Nathan D., Papin, Jason A., Palsson, Bernhard Ø.
出版 2002