Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

od Medlock, Gregory L., Papin, Jason A.
Izdano u Cell Syst (2020)

Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions

od Medlock, Gregory L., Moutinho, Thomas J., Papin, Jason A.
Izdano u PLoS Comput Biol (2020)

Metabolic Network Modeling of Microbial Communities

od Biggs, Matthew B., Medlock, Gregory L., Kolling, Glynis L., Papin, Jason A.
Izdano u Wiley Interdiscip Rev Syst Biol Med (2015)

Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions

od Moutinho, Thomas J., Panagides, John C., Biggs, Matthew B., Medlock, Gregory L., Kolling, Glynis L., Papin, Jason A.
Izdano u PLoS One (2017)

Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota

od Biggs, Matthew B, Medlock, Gregory L, Moutinho, Thomas J, Lees, Hannah J, Swann, Jonathan R, Kolling, Glynis L, Papin, Jason A
Izdano u ISME J (2017)

Influential Parameters for the Analysis of Intracellular Parasite Metabolomics

od Carey, Maureen A., Covelli, Vincent, Brown, Audrey, Medlock, Gregory L., Haaren, Mareike, Cooper, Jessica G., Papin, Jason A., Guler, Jennifer L.
Izdano u mSphere (2018)

Inferring metabolic mechanisms of interaction within a defined gut microbiota

od Medlock, Gregory L., Carey, Maureen A., McDuffie, Dennis G., Mundy, Michael B., Giallourou, Natasa, Swann, Jonathan R., Kolling, Glynis L., Papin, Jason A.
Izdano u Cell Syst (2018)

A novel mouse model of Campylobacter jejuni enteropathy and diarrhea

od Giallourou, Natasa, Medlock, Gregory L., Bolick, David T., Medeiros, Pedro HQS, Ledwaba, Solanka E., Kolling, Glynis L., Tung, Kenneth, Guerry, Patricia, Swann, Jonathan R., Guerrant, Richard L.
Izdano u PLoS Pathog (2018)

Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli

od Bartelt, Luther A., Bolick, David T., Mayneris-Perxachs, Jordi, Kolling, Glynis L., Medlock, Gregory L., Zaenker, Edna I., Donowitz, Jeffery, Thomas-Beckett, Rose Viguna, Rogala, Allison, Carroll, Ian M., Singer, Steven M., Papin, Jason, Swann, Jonathan R., Guerrant, Richard L.
Izdano u PLoS Pathog (2017)

MEMOTE for standardized genome-scale metabolic model testing

od Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Izdano u Nat Biotechnol (2020)

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

od Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Sheriff, Rahuman S. Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Izdano u Nat Biotechnol (2020)