Integration of expression data in genome-scale metabolic network reconstructions

по Blazier, Anna S., Papin, Jason A.
Опубликовано 2012

Computing Biology

по Nussinov, Ruth, Papin, Jason A.
Опубликовано в: PLoS Comput Biol (2016)

History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment

по Yen, Phillip, Papin, Jason A.
Опубликовано в: PLoS Biol (2017)

How can computation advance microbiome research?

по Nussinov, Ruth, Papin, Jason A.
Опубликовано в: PLoS Comput Biol (2017)

Reconciling high-throughput gene essentiality data with metabolic network reconstructions

по Blazier, Anna S., Papin, Jason A.
Опубликовано в: PLoS Comput Biol (2019)

The JAK-STAT Signaling Network in the Human B-Cell: An Extreme Signaling Pathway Analysis

по Papin, Jason A., Palsson, Bernhard O.
Опубликовано 2004

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

по Biggs, Matthew B., Papin, Jason A.
Опубликовано 2013

MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data

по Jensen, Paul A., Papin, Jason A.
Опубликовано 2014

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA

по Biggs, Matthew B., Papin, Jason A.
Опубликовано в: PLoS Comput Biol (2017)

Ten simple rules for biologists learning to program

по Carey, Maureen A., Papin, Jason A.
Опубликовано в: PLoS Comput Biol (2018)

Biomedical applications of genome-scale metabolic network reconstructions of human pathogens

по Dunphy, Laura J., Papin, Jason A.
Опубликовано в: Curr Opin Biotechnol (2017)

Metabolic network-guided binning of metagenomic sequence fragments

по Biggs, Matthew B., Papin, Jason A.
Опубликовано в: Bioinformatics (2016)

Functional integration of a metabolic network model and expression data without arbitrary thresholding

по Jensen, Paul A., Papin, Jason A.
Опубликовано в: Bioinformatics (2011)

Wisdom of crowds in computational biology

по Papin, Jason A., Mac Gabhann, Feilim
Опубликовано в: PLoS Comput Biol (2019)

Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

по Medlock, Gregory L., Papin, Jason A.
Опубликовано в: Cell Syst (2020)

Computing the Dynamic Supramolecular Structural Proteome

по Nussinov, Ruth, Papin, Jason A., Vakser, Ilya
Опубликовано в: PLoS Comput Biol (2017)

SIMPLE: A Sequential Immunoperoxidase Labeling and Erasing Method

по Glass, George, Papin, Jason A., Mandell, James W.
Опубликовано 2009

Multiscale Computational Models of Complex Biological Systems

по Walpole, Joseph, Papin, Jason A., Peirce, Shayn M.
Опубликовано 2013

Integrated experimental and computational analyses reveal differential metabolic functionality in antibiotic-resistant Pseudomonas aeruginosa

по Dunphy, Laura J., Yen, Phillip, Papin, Jason A.
Опубликовано в: Cell Syst (2019)

Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

по Price, Nathan D., Papin, Jason A., Palsson, Bernhard Ø.
Опубликовано 2002