Integration of expression data in genome-scale metabolic network reconstructions

nork Blazier, Anna S., Papin, Jason A.
Argitaratua 2012

Computing Biology

nork Nussinov, Ruth, Papin, Jason A.
Argitaratua izan da PLoS Comput Biol (2016)

History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment

nork Yen, Phillip, Papin, Jason A.
Argitaratua izan da PLoS Biol (2017)

How can computation advance microbiome research?

nork Nussinov, Ruth, Papin, Jason A.
Argitaratua izan da PLoS Comput Biol (2017)

Reconciling high-throughput gene essentiality data with metabolic network reconstructions

nork Blazier, Anna S., Papin, Jason A.
Argitaratua izan da PLoS Comput Biol (2019)

The JAK-STAT Signaling Network in the Human B-Cell: An Extreme Signaling Pathway Analysis

nork Papin, Jason A., Palsson, Bernhard O.
Argitaratua 2004

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation

nork Biggs, Matthew B., Papin, Jason A.
Argitaratua 2013

MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data

nork Jensen, Paul A., Papin, Jason A.
Argitaratua 2014

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA

nork Biggs, Matthew B., Papin, Jason A.
Argitaratua izan da PLoS Comput Biol (2017)

Ten simple rules for biologists learning to program

nork Carey, Maureen A., Papin, Jason A.
Argitaratua izan da PLoS Comput Biol (2018)

Biomedical applications of genome-scale metabolic network reconstructions of human pathogens

nork Dunphy, Laura J., Papin, Jason A.
Argitaratua izan da Curr Opin Biotechnol (2017)

Metabolic network-guided binning of metagenomic sequence fragments

nork Biggs, Matthew B., Papin, Jason A.
Argitaratua izan da Bioinformatics (2016)

Functional integration of a metabolic network model and expression data without arbitrary thresholding

nork Jensen, Paul A., Papin, Jason A.
Argitaratua izan da Bioinformatics (2011)

Wisdom of crowds in computational biology

nork Papin, Jason A., Mac Gabhann, Feilim
Argitaratua izan da PLoS Comput Biol (2019)

Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

nork Medlock, Gregory L., Papin, Jason A.
Argitaratua izan da Cell Syst (2020)

Computing the Dynamic Supramolecular Structural Proteome

nork Nussinov, Ruth, Papin, Jason A., Vakser, Ilya
Argitaratua izan da PLoS Comput Biol (2017)

SIMPLE: A Sequential Immunoperoxidase Labeling and Erasing Method

nork Glass, George, Papin, Jason A., Mandell, James W.
Argitaratua 2009

Multiscale Computational Models of Complex Biological Systems

nork Walpole, Joseph, Papin, Jason A., Peirce, Shayn M.
Argitaratua 2013

Integrated experimental and computational analyses reveal differential metabolic functionality in antibiotic-resistant Pseudomonas aeruginosa

nork Dunphy, Laura J., Yen, Phillip, Papin, Jason A.
Argitaratua izan da Cell Syst (2019)

Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

nork Price, Nathan D., Papin, Jason A., Palsson, Bernhard Ø.
Argitaratua 2002