Reverse Engineering Cancer: Inferring Transcriptional Gene Signatures from Copy Number Aberrations with ICAro

by Angeli, Davide, Fanciulli, Maurizio, Pallocca, Matteo
Published in Cancers (Basel) (2019)

The perfect personalized cancer therapy: cancer vaccines against neoantigens

by Aurisicchio, Luigi, Pallocca, Matteo, Ciliberto, Gennaro, Palombo, Fabio
Published in J Exp Clin Cancer Res (2018)

PTEN as a Prognostic/Predictive Biomarker in Cancer: An Unfulfilled Promise?

by Bazzichetto, Chiara, Conciatori, Fabiana, Pallocca, Matteo, Falcone, Italia, Fanciulli, Maurizio, Cognetti, Francesco, Milella, Michele, Ciuffreda, Ludovica
Published in Cancers (Basel) (2019)

Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants

by Massacci, Alice, Sperandio, Eleonora, D’Ambrosio, Lorenzo, Maffei, Mariano, Palombo, Fabio, Aurisicchio, Luigi, Ciliberto, Gennaro, Pallocca, Matteo
Published in J Transl Med (2020)

Long Non-coding MIR205HG Depletes Hsa-miR-590-3p Leading to Unrestrained Proliferation in Head and Neck Squamous Cell Carcinoma

by Di Agostino, Silvia, Valenti, Fabio, Sacconi, Andrea, Fontemaggi, Giulia, Pallocca, Matteo, Pulito, Claudio, Ganci, Federica, Muti, Paola, Strano, Sabrina, Blandino, Giovanni
Published in Theranostics (2018)

WEP: a high-performance analysis pipeline for whole-exome data

by D'Antonio, Mattia, D'Onorio De Meo, Paolo, Paoletti, Daniele, Elmi, Berardino, Pallocca, Matteo, Sanna, Nico, Picardi, Ernesto, Pesole, Graziano, Castrignanò, Tiziana
Published 2013

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

by D'Antonio, Mattia, D'Onorio De Meo, Paolo, Pallocca, Matteo, Picardi, Ernesto, D'Erchia, Anna Maria, Calogero, Raffaele A, Castrignanò, Tiziana, Pesole, Graziano
Published in BMC Genomics (2015)

Deptor transcriptionally regulates endoplasmic reticulum homeostasis in multiple myeloma cells

by Catena, Valeria, Bruno, Tiziana, De Nicola, Francesca, Goeman, Frauke, Pallocca, Matteo, Iezzi, Simona, Sorino, Cristina, Cigliana, Giovanni, Floridi, Aristide, Blandino, Giovanni, Fanciulli, Maurizio
Published in Oncotarget (2016)

Combinations of immuno-checkpoint inhibitors predictive biomarkers only marginally improve their individual accuracy

by Pallocca, Matteo, Angeli, Davide, Palombo, Fabio, Sperati, Francesca, Milella, Michele, Goeman, Frauke, De Nicola, Francesca, Fanciulli, Maurizio, Nisticò, Paola, Quintarelli, Concetta, Ciliberto, Gennaro
Published in J Transl Med (2019)

Multitargeting activity of miR-24 inhibits long-term melatonin anticancer effects

by Mori, Federica, Ferraiuolo, Maria, Santoro, Raffaela, Sacconi, Andrea, Goeman, Frauke, Pallocca, Matteo, Pulito, Claudio, Korita, Etleva, Fanciulli, Maurizio, Muti, Paola, Blandino, Giovanni, Strano, Sabrina
Published in Oncotarget (2016)

BCL-X(L) overexpression promotes tumor progression-associated properties

by Trisciuoglio, Daniela, Tupone, Maria Grazia, Desideri, Marianna, Di Martile, Marta, Gabellini, Chiara, Buglioni, Simonetta, Pallocca, Matteo, Alessandrini, Gabriele, D’Aguanno, Simona, Del Bufalo, Donatella
Published in Cell Death Dis (2017)

Poly-specific neoantigen-targeted cancer vaccines delay patient derived tumor growth

by Aurisicchio, Luigi, Salvatori, Erika, Lione, Lucia, Bandini, Silvio, Pallocca, Matteo, Maggio, Roberta, Fanciulli, Maurizio, De Nicola, Francesca, Goeman, Frauke, Ciliberto, Gennaro, Conforti, Antonella, Luberto, Laura, Palombo, Fabio
Published in J Exp Clin Cancer Res (2019)

Hepatitis B protein HBx binds the DLEU2 lncRNA to sustain cccDNA and host cancer-related gene transcription

by Salerno, Debora, Chiodo, Letizia, Alfano, Vincenzo, Floriot, Oceane, Cottone, Grazia, Paturel, Alexia, Pallocca, Matteo, Plissonnier, Marie-Laure, Jeddari, Safaa, Belloni, Laura, Zeisel, Mirjam, Levrero, Massimo, Guerrieri, Francesca
Published in Gut (2020)

Che-1 sustains hypoxic response of colorectal cancer cells by affecting Hif-1α stabilization

by Bruno, Tiziana, Valerio, Mariacristina, Casadei, Luca, De Nicola, Francesca, Goeman, Frauke, Pallocca, Matteo, Catena, Valeria, Iezzi, Simona, Sorino, Cristina, Desantis, Agata, Manetti, Cesare, Blandino, Giovanni, Floridi, Aristide, Fanciulli, Maurizio
Published in J Exp Clin Cancer Res (2017)

B4GALT1 Is a New Candidate to Maintain the Stemness of Lung Cancer Stem Cells

by De Vitis, Claudia, Corleone, Giacomo, Salvati, Valentina, Ascenzi, Francesca, Pallocca, Matteo, De Nicola, Francesca, Fanciulli, Maurizio, di Martino, Simona, Bruschini, Sara, Napoli, Christian, Ricci, Alberto, Bassi, Massimiliano, Venuta, Federico, Rendina, Erino Angelo, Ciliberto, Gennaro, Mancini, Rita
Published in J Clin Med (2019)

Che‐1 is targeted by c‐Myc to sustain proliferation in pre‐B‐cell acute lymphoblastic leukemia

by Folgiero, Valentina, Sorino, Cristina, Pallocca, Matteo, De Nicola, Francesca, Goeman, Frauke, Bertaina, Valentina, Strocchio, Luisa, Romania, Paolo, Pitisci, Angela, Iezzi, Simona, Catena, Valeria, Bruno, Tiziana, Strimpakos, Georgios, Passananti, Claudio, Mattei, Elisabetta, Blandino, Giovanni, Locatelli, Franco, Fanciulli, Maurizio
Published in EMBO Rep (2018)

Targeting a phospho-STAT3-miRNAs pathway improves vesicular hepatic steatosis in an in vitro and in vivo model

by Belloni, Laura, Di Cocco, Silvia, Guerrieri, Francesca, Nunn, Abigail D. G., Piconese, Silvia, Salerno, Debora, Testoni, Barbara, Pulito, Claudio, Mori, Federica, Pallocca, Matteo, Sacconi, Andrea, Vivoli, Elisa, Marra, Fabio, Strano, Sabrina, Blandino, Giovanni, Levrero, Massimo, Pediconi, Natalia
Published in Sci Rep (2018)

Deep sequencing and pathway-focused analysis revealed multigene oncodriver signatures predicting survival outcomes in advanced colorectal cancer

by De Nicola, Francesca, Goeman, Frauke, Pallocca, Matteo, Sperati, Francesca, Pizzuti, Laura, Melucci, Elisa, Casini, Beatrice, Amoreo, Carla Azzurra, Gallo, Enzo, Diodoro, Maria Grazia, Buglioni, Simonetta, Mazzotta, Marco, Vici, Patrizia, Sergi, Domenico, Di Lauro, Luigi, Barba, Maddalena, Pescarmona, Edoardo, Ciliberto, Gennaro, De Maria, Ruggero, Fanciulli, Maurizio, Maugeri-Saccà, Marcello
Published in Oncogenesis (2018)

Coexisting YAP expression and TP53 missense mutations delineates a molecular scenario unexpectedly associated with better survival outcomes in advanced gastric cancer

by Pallocca, Matteo, Goeman, Frauke, De Nicola, Francesca, Melucci, Elisa, Sperati, Francesca, Terrenato, Irene, Pizzuti, Laura, Casini, Beatrice, Gallo, Enzo, Amoreo, Carla Azzurra, Vici, Patrizia, Di Lauro, Luigi, Buglioni, Simonetta, Diodoro, Maria Grazia, Pescarmona, Edoardo, Mazzotta, Marco, Barba, Maddalena, Fanciulli, Maurizio, De Maria, Ruggero, Ciliberto, Gennaro, Maugeri-Saccà, Marcello
Published in J Transl Med (2018)

The clinical significance of PD-L1 in advanced gastric cancer is dependent on ARID1A mutations and ATM expression

by Buglioni, Simonetta, Melucci, Elisa, Sperati, Francesca, Pallocca, Matteo, Terrenato, Irene, De Nicola, Francesca, Goeman, Frauke, Casini, Beatrice, Amoreo, Carla Azzurra, Gallo, Enzo, Diodoro, Maria Grazia, Pescarmona, Edoardo, Vici, Patrizia, Sergi, Domenico, Pizzuti, Laura, Di Lauro, Luigi, Mazzotta, Marco, Barba, Maddalena, Fanciulli, Maurizio, Vitale, Ilio, De Maria, Ruggero, Ciliberto, Gennaro, Maugeri-Saccà, Marcello
Published in Oncoimmunology (2018)