Structure of Apolipoprotein A-I N Terminus on Nascent High Density Lipoproteins

per Lagerstedt, Jens O., Cavigiolio, Giorgio, Budamagunta, Madhu S., Pagani, Ioanna, Voss, John C., Oda, Michael N.
Publicat 2011

Modifying Apolipoprotein A-I by Malondialdehyde, but Not by an Array of Other Reactive Carbonyls, Blocks Cholesterol Efflux by the ABCA1 Pathway

per Shao, Baohai, Pennathur, Subramaniam, Pagani, Ioanna, Oda, Michael N., Witztum, Joseph L., Oram, John F., Heinecke, Jay W.
Publicat 2010

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

per Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.
Publicat 2012

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

per Reddy, T.B.K., Thomas, Alex D., Stamatis, Dimitri, Bertsch, Jon, Isbandi, Michelle, Jansson, Jakob, Mallajosyula, Jyothi, Pagani, Ioanna, Lobos, Elizabeth A., Kyrpides, Nikos C.
Publicat a Nucleic Acids Res (2014)

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

per Liolios, Konstantinos, Schriml, Lynn, Hirschman, Lynette, Pagani, Ioanna, Nosrat, Bahador, Sterk, Peter, White, Owen, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Taylor, Chris, Kyrpides, Nikos C., Field, Dawn
Publicat 2012

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

per Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicat 2012

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece

per Reeve, Wayne, Ballard, Ross, Howieson, John, Drew, Elizabeth, Tian, Rui, Bräu, Lambert, Munk, Christine, Davenport, Karen, Chain, Patrick, Goodwin, Lynne, Pagani, Ioanna, Huntemann, Marcel, Mavrommatis, Konstantinos, Pati, Amrita, Markowitz, Victor, Ivanova, Natalia, Woyke, Tanja, Kyrpides, Nikos
Publicat 2013

IMG/M: the integrated metagenome data management and comparative analysis system

per Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicat 2012

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

per Hawley, Erik R., Piao, Hailan, Scott, Nicole M., Malfatti, Stephanie, Pagani, Ioanna, Huntemann, Marcel, Chen, Amy, Glavina del Rio, Tijana, Foster, Brian, Copeland, Alex, Jansson, Janet, Pati, Amrita, Tringe, Susannah, Gilbert, Jack A., Lorenson, Thomas D., Hess, Matthias
Publicat 2014

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca

per Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Gueddou, Abdellatif, Hezbri, Karima, Ktari, Amir, Louati, Moussa, Nouioui, Imen, Chen, Amy, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Pagani, Ioanna, Sen, Arnab, Wall, Luis, Woyke, Tanja, Gtari, Maher, Tisa, Louis S.
Publicat a Genome Announc (2016)

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

per Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Louati, Moussa, Nouioui, Imen, Ktari, Amir, Hezbri, Karima, Gueddou, Abdellatif, Chen, Amy, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Pagani, Ioanna, Sen, Arnab, Wall, Luis, Woyke, Tanja, Gtari, Maher, Tisa, Louis S.
Publicat a Genome Announc (2016)

IMG/M 4 version of the integrated metagenome comparative analysis system

per Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Pagani, Ioanna, Tringe, Susannah, Huntemann, Marcel, Billis, Konstantinos, Varghese, Neha, Tennessen, Kristin, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicat 2014

Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T))

per Anderson, Iain, Tindall, Brian J., Rohde, Manfred, Lucas, Susan, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Peters, Lin, Pati, Amrita, Mikhailova, Natalia, Pagani, Ioanna, Teshima, Hazuki, Han, Cliff, Tapia, Roxanne, Land, Miriam, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos, Ivanova, Natalia
Publicat 2012

Complete genome sequence of Dehalobacter restrictus PER-K23(T)

per Kruse, Thomas, Maillard, Julien, Goodwin, Lynne, Woyke, Tanja, Teshima, Hazuki, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Huntemann, Marcel, Wei, Chia-Lin, Han, James, Chen, Amy, Kyrpides, Nikos, Szeto, Ernest, Markowitz, Victor, Ivanova, Natalia, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Nolan, Matt, Holliger, Christof, Smidt, Hauke
Publicat 2013

Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3)

per Kallimanis, Aristeidis, LaButti, Kurt M., Lapidus, Alla, Clum, Alicia, Lykidis, Athanasios, Mavromatis, Kostantinos, Pagani, Ioanna, Liolios, Konstantinos, Ivanova, Natalia, Goodwin, Lynne, Pitluck, Sam, Chen, Amy, Palaniappan, Krishna, Markowitz, Victor, Bristow, Jim, Velentzas, Athanasios D., Perisynakis, Angelos, Ouzounis, Christos C, Kyrpides, Nikos C., Koukkou, Anna I., Drainas, Constantin
Publicat 2011

Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

per Aylward, Frank O., Tremmel, Daniel M., Bruce, David C., Chain, Patrick, Chen, Amy, Walston Davenport, Karen, Detter, Chris, Han, Cliff S., Han, James, Huntemann, Marcel, Ivanova, Natalia N., Kyrpides, Nikos C., Markowitz, Victor, Mavrommatis, Kostas, Nolan, Matt, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Deshpande, Shweta, Goodwin, Lynne, Woyke, Tanja, Currie, Cameron R.
Publicat 2013

Complete genome sequence of Serratia plymuthica strain AS12

per Neupane, Saraswoti, Finlay, Roger D., Alström, Sadhna, Goodwin, Lynne, Kyrpides, Nikos C., Lucas, Susan, Lapidus, Alla, Bruce, David, Pitluck, Sam, Peters, Lin, Ovchinnikova, Galina, Chertkov, Olga, Han, James, Han, Cliff, Tapia, Roxanne, Detter, John C., Land, Miriam, Hauser, Loren, Cheng, Jan-Fang, Ivanova, Natalia, Pagani, Ioanna, Klenk, Hans-Peter, Woyke, Tanja, Högberg, Nils
Publicat 2012

Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3

per Lucas, Susan, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Sam, Peters, Lin, Mikhailova, Natalia, Teshima, Hazuki, Detter, John C., Han, Cliff, Tapia, Roxanne, Land, Miriam, Hauser, Loren, Kyrpides, Nikos C., Ivanova, Natalia, Pagani, Ioanna, Vannier, Pauline, Oger, Phil, Bartlett, Douglas H., Noll, Kenneth M., Woyke, Tanja, Jebbar, Mohamed
Publicat 2012

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13

per Neupane, Saraswoti, Finlay, Roger D., Kyrpides, Nikos C., Goodwin, Lynne, Alström, Sadhna, Lucas, Susan, Land, Miriam, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Bruce, David, Pitluck, Sam, Peters, Lin, Ovchinnikova, Galina, Held, Brittany, Han, Cliff, Detter, John C., Tapia, Roxanne, Hauser, Loren, Ivanova, Natalia, Pagani, Ioanna, Woyke, Tanja, Klenk, Hans-Peter, Högberg, Nils
Publicat 2012

Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete

per Davis, Jennifer R., Goodwin, Lynne, Teshima, Hazuki, Detter, Chris, Tapia, Roxanne, Han, Cliff, Huntemann, Marcel, Wei, Chia-Lin, Han, James, Chen, Amy, Kyrpides, Nikos, Mavrommatis, Kostas, Szeto, Ernest, Markowitz, Victor, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Woyke, Tanja, Pitluck, Sam, Peters, Lin, Nolan, Matt, Land, Miriam, Sello, Jason K.
Publicat 2013